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The map label for this gene is recR

Identifier: 78224610

GI number: 78224610

Start: 3837754

End: 3838347

Strand: Reverse

Name: recR

Synonym: Gmet_3420

Alternate gene names: 78224610

Gene position: 3838347-3837754 (Counterclockwise)

Preceding gene: 78224611

Following gene: 78224609

Centisome position: 96.02

GC content: 63.3

Gene sequence:

>594_bases
ATGCTACAGTCCTCAAACTCGTTTGCGCGGCTCCTTGCGGAGCTGCAGAAATTGCCGGGTGTTGGTGAGAAAACCGCGTT
GCGGCTCGCGTTTCACCTGCTTAAATACCCGGAGAATACCGCAGCCCTTGCTGAGAGCCTCGGCGAGGTGCTGAGCCGGG
TGAAATTTTGTTCCGTCTGCTTCGGCATCACCGAGGAAGATCCCTGCCGGCTCTGCAGCAGCGACCGCGACGAGACGTCC
CTTTGTGTTGTCGAGGAACCCCAGGACCTCCTGGCGGTGGAGAGGACCCGGGCCTTCCGGGGACGTTACCACGTCCTTCA
GGGGGCCCTGTCGCCGTTGAACGGGGTCACTCCCGACCGGCTCCGGATCGCCGAACTGATGCGGCGGCTCGAAGAGGGTA
CGGTGCGGGAGGTGGTCATTGCCACCAACTTCTCCGTTGAGGGGGAAACGACGGCCCTCTATCTTGCGCGGCAGATCAAG
CCCCTTGGCATCAGGGTCACGCGGCTTGCCCACGGCATCCCCCTGGGGAGCGATCTGGAGTATGTGGACGCGGCCACGGT
GCAGCGGGCCCTTGAGGGACGGAGCGAATTGTAG

Upstream 100 bases:

>100_bases
AAATCTTTAGTGCAAATCGCAAAAAGCGGTGAAACTTTACCGTAAGTAAAAAGTTTTATTTTCGTTTTAATAAAAAATTG
TTTTATCTTTGGCGGGAACT

Downstream 100 bases:

>100_bases
GACAAATGAGGCACGTGCAAAACGTGATTGGGAGGCCGGGATGCTGGCGCAAGAGAACGAGGAAGTGAGGCGTACCCCTC
GGTACGTTGAGCTTTCGAGT

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MLQSSNSFARLLAELQKLPGVGEKTALRLAFHLLKYPENTAALAESLGEVLSRVKFCSVCFGITEEDPCRLCSSDRDETS
LCVVEEPQDLLAVERTRAFRGRYHVLQGALSPLNGVTPDRLRIAELMRRLEEGTVREVVIATNFSVEGETTALYLARQIK
PLGIRVTRLAHGIPLGSDLEYVDAATVQRALEGRSEL

Sequences:

>Translated_197_residues
MLQSSNSFARLLAELQKLPGVGEKTALRLAFHLLKYPENTAALAESLGEVLSRVKFCSVCFGITEEDPCRLCSSDRDETS
LCVVEEPQDLLAVERTRAFRGRYHVLQGALSPLNGVTPDRLRIAELMRRLEEGTVREVVIATNFSVEGETTALYLARQIK
PLGIRVTRLAHGIPLGSDLEYVDAATVQRALEGRSEL
>Mature_197_residues
MLQSSNSFARLLAELQKLPGVGEKTALRLAFHLLKYPENTAALAESLGEVLSRVKFCSVCFGITEEDPCRLCSSDRDETS
LCVVEEPQDLLAVERTRAFRGRYHVLQGALSPLNGVTPDRLRIAELMRRLEEGTVREVVIATNFSVEGETTALYLARQIK
PLGIRVTRLAHGIPLGSDLEYVDAATVQRALEGRSEL

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain

Homologues:

Organism=Escherichia coli, GI1786678, Length=199, Percent_Identity=41.2060301507538, Blast_Score=159, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECR_GEOMG (Q39Q42)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_386357.1
- ProteinModelPortal:   Q39Q42
- SMR:   Q39Q42
- STRING:   Q39Q42
- GeneID:   3741216
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_3420
- NMPDR:   fig|269799.3.peg.3395
- eggNOG:   COG0353
- HOGENOM:   HBG571744
- OMA:   HGAISPM
- PhylomeDB:   Q39Q42
- ProtClustDB:   PRK00076
- BioCyc:   GMET269799:GMET_3420-MONOMER
- HAMAP:   MF_00017
- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967
- SMART:   SM00278
- SMART:   SM00493
- TIGRFAMs:   TIGR00615

Pfam domain/function: PF02132 RecR; PF01751 Toprim; SSF111304 RecR

EC number: NA

Molecular weight: Translated: 21768; Mature: 21768

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSSNSFARLLAELQKLPGVGEKTALRLAFHLLKYPENTAALAESLGEVLSRVKFCSVC
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
FGITEEDPCRLCSSDRDETSLCVVEEPQDLLAVERTRAFRGRYHVLQGALSPLNGVTPDR
HCCCCCCHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LRIAELMRRLEEGTVREVVIATNFSVEGETTALYLARQIKPLGIRVTRLAHGIPLGSDLE
HHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCH
YVDAATVQRALEGRSEL
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLQSSNSFARLLAELQKLPGVGEKTALRLAFHLLKYPENTAALAESLGEVLSRVKFCSVC
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
FGITEEDPCRLCSSDRDETSLCVVEEPQDLLAVERTRAFRGRYHVLQGALSPLNGVTPDR
HCCCCCCHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LRIAELMRRLEEGTVREVVIATNFSVEGETTALYLARQIKPLGIRVTRLAHGIPLGSDLE
HHHHHHHHHHHCCCHHEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCH
YVDAATVQRALEGRSEL
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA