Click here to switch to the map view.

The map label for this gene is ybaB [C]

Identifier: 78224611

GI number: 78224611

Start: 3838624

End: 3838938

Strand: Reverse

Name: ybaB [C]

Synonym: Gmet_3421

Alternate gene names: 78224611

Gene position: 3838938-3838624 (Counterclockwise)

Preceding gene: 78224612

Following gene: 78224610

Centisome position: 96.04

GC content: 57.46

Gene sequence:

>315_bases
ATGTCCAAAGGTTTGGCAGGTATCATGAAGCAGGCCCAGATGATGCAGCAGAAGATGGCGAAACTGCAGGAAGAGGCGGC
GCAGCAGACCGCCGAGGCGACGGCAGGGGGCGGTGCGGTGACTGCCGTGGTGACCGGCAAGAACCAGCTCGTTTCCCTGA
CAATCAAGCCGGAAGCGGTTGACCCCAACGATGTGGAAATGCTCCAGGATCTCATCGTTGCCGCTGTGAATGAGGCCCTC
AAAAAGGTTCAGTCCAAGTTTTCCGAGGAGATGGGCAAGATTACGGGCGGCCTCAATATTCCCGGCCTTTTCTGA

Upstream 100 bases:

>100_bases
GAGCCCCTGGAGCGGAAAGAGTCCCGCTAACAATGTTTTAATTTCAACAAAACTCTTTAATCAAGAGTAAATCTCATCTC
ACGAAACCACGGAGGAACAG

Downstream 100 bases:

>100_bases
GTCTGGCATGGGTCTGTCCGGGCATTGTCCCGGTTGCAGCCGGTTTTGGGGCGGTAGCTGGAAGGCTGTCGCCCCTTCTT
TGTATCTGACGCGAAAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MSKGLAGIMKQAQMMQQKMAKLQEEAAQQTAEATAGGGAVTAVVTGKNQLVSLTIKPEAVDPNDVEMLQDLIVAAVNEAL
KKVQSKFSEEMGKITGGLNIPGLF

Sequences:

>Translated_104_residues
MSKGLAGIMKQAQMMQQKMAKLQEEAAQQTAEATAGGGAVTAVVTGKNQLVSLTIKPEAVDPNDVEMLQDLIVAAVNEAL
KKVQSKFSEEMGKITGGLNIPGLF
>Mature_103_residues
SKGLAGIMKQAQMMQQKMAKLQEEAAQQTAEATAGGGAVTAVVTGKNQLVSLTIKPEAVDPNDVEMLQDLIVAAVNEALK
KVQSKFSEEMGKITGGLNIPGLF

Specific function: Unknown

COG id: COG0718

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0133 family [H]

Homologues:

Organism=Escherichia coli, GI1786677, Length=101, Percent_Identity=37.6237623762376, Blast_Score=75, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004401 [H]

Pfam domain/function: PF02575 DUF149 [H]

EC number: NA

Molecular weight: Translated: 10917; Mature: 10786

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGLAGIMKQAQMMQQKMAKLQEEAAQQTAEATAGGGAVTAVVTGKNQLVSLTIKPEAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCC
DPNDVEMLQDLIVAAVNEALKKVQSKFSEEMGKITGGLNIPGLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SKGLAGIMKQAQMMQQKMAKLQEEAAQQTAEATAGGGAVTAVVTGKNQLVSLTIKPEAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCC
DPNDVEMLQDLIVAAVNEALKKVQSKFSEEMGKITGGLNIPGLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA