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The map label for this gene is 78224445

Identifier: 78224445

GI number: 78224445

Start: 3663042

End: 3664460

Strand: Direct

Name: 78224445

Synonym: Gmet_3254

Alternate gene names: NA

Gene position: 3663042-3664460 (Clockwise)

Preceding gene: 78224444

Following gene: 78224446

Centisome position: 91.64

GC content: 59.69

Gene sequence:

>1419_bases
ATGAAAAAGAAAGTATTGGCAGTATCCGCAGCCTGTGCGCTGACCGCTGCGACGGCAGTTCCGGCCCTGGCGCTGGAAAA
CGAGTTCCACGGGATGTTCCGGGTGTTCGGGACGATGTCAAACTTCAACGACGGTGGTTCCGGGCGCCTTCTGCCTACAG
ACGCAACCACGGGAAGAGACCCCAAGACCAGGAGCTTCGTCGAGCAGCGGGCCCGCCTCATGTACATCGCCAAGGCCAAC
GACGATCTCAAACTGGTTACCCACTTCGAGATCGACTCCCGCTGGGGTGACAACTCCTATGCCAACGGCCGCAACTCCGG
CGGCGCCATCGGCGCCGACACCGTGAACCTGGAAACCAAGAACGTCTACCTCGACTTCAACATCCCCTCCACCCCCATGA
ACTTCAAGGTCGGTATCCAGCCGCTCGTCGACTCCTACAAGGGGGTCTTCTTCAACACCGACGTGGCCGCAGCCCTTGCC
ACCGCCAAGCTCGGCAACGGTTCCGTGGTGGTCGGCTTCGCCCGGTTGGACGACGCCGACACCTTTACCCTTGGTTCAGC
AGCTGGCAGATCAACGTCCACCCCCGGTAAGGCCAAGCGCGACCTCTACATCGTGGACGGCAAGTACAACATCACCAAGG
ACGTGAAGGTTGGGGCCTCCTACTACCTCCTCAACGTCGATCAGAAGGCCGGGGATAACTTCGTCCCCACATCAACCACC
CAAACTTATGACTACATGCGCCACACCTTCGGCGTGAACGCTGAAGCAAAGTTCGCACCTCTCACCCTGGACGGCTTCCT
CCTCTATCAGACCGCCCGCACCAACGGGCCGGACAAGATCGACCAGAAGGGCTGGGCCGCCAACCTTACCGGCAAGGGGA
AGCTGGGCCCTGGCACCCTGAAGGCGTCGTTCCTCTATGCCTCCGGCGACAGCAAGAGAGGCACGGTAAGAGATGACAAC
ACCTATTACGGGATCACCAACGAGACCTCTGGAGCCAACGGCGAGCACAGCTTCTATGAGTCCGACATGATGATCCTGTT
CCGGAACAAGTACAACATTACCGGCGACCGGGCCATCGTGTACAACGTGACCAACGTCATCGGCGGCTTTGTGGGCTACA
ACGCCAACATTACTCCCAAGGCCTTCGCCAACGTCAATGCCGGTTTCGTGGCTGCCGCCACGGGGAACGACGACTTCGGT
TCCGCGCGCGTCACGATTGGCGGCCACAAGAGTGATTACCTCGGCACCGAGATCAACGGCGAAATCGGCTATAAGGTGTT
CGACAACCTGACCGCCAGCCTCCAGGGCGCCTATGTGTTCCTTGGCGACTACTACAAGGATACTGTCGGCACGGCAGCCA
ATCCTCAAACCCCGCGCGACCCGTACGAGGGCCGCATCATGCTGAACTACGCATTCTAA

Upstream 100 bases:

>100_bases
CTCTCGGGAAAGGTGGTGATCGGCGAAACAGCACAACAAACCACGGCTTTTAGCACCACAACTCTCATATGCAGTTATTA
TCACCAATGAAGGAGGCAAC

Downstream 100 bases:

>100_bases
GTAATGCTCGACGCCGGGGGGAAGCGCTGCTTCCCCCCGGTTTTTCTTTACGCTGTGCCGTTTGACTTTACCGCGCTGTC
TGGTTAACTAAATGAACAGG

Product: LamB porin family protein

Products: NA

Alternate protein names: Porin OmpJ; OmpJ-Like Porin

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MKKKVLAVSAACALTAATAVPALALENEFHGMFRVFGTMSNFNDGGSGRLLPTDATTGRDPKTRSFVEQRARLMYIAKAN
DDLKLVTHFEIDSRWGDNSYANGRNSGGAIGADTVNLETKNVYLDFNIPSTPMNFKVGIQPLVDSYKGVFFNTDVAAALA
TAKLGNGSVVVGFARLDDADTFTLGSAAGRSTSTPGKAKRDLYIVDGKYNITKDVKVGASYYLLNVDQKAGDNFVPTSTT
QTYDYMRHTFGVNAEAKFAPLTLDGFLLYQTARTNGPDKIDQKGWAANLTGKGKLGPGTLKASFLYASGDSKRGTVRDDN
TYYGITNETSGANGEHSFYESDMMILFRNKYNITGDRAIVYNVTNVIGGFVGYNANITPKAFANVNAGFVAAATGNDDFG
SARVTIGGHKSDYLGTEINGEIGYKVFDNLTASLQGAYVFLGDYYKDTVGTAANPQTPRDPYEGRIMLNYAF

Sequences:

>Translated_472_residues
MKKKVLAVSAACALTAATAVPALALENEFHGMFRVFGTMSNFNDGGSGRLLPTDATTGRDPKTRSFVEQRARLMYIAKAN
DDLKLVTHFEIDSRWGDNSYANGRNSGGAIGADTVNLETKNVYLDFNIPSTPMNFKVGIQPLVDSYKGVFFNTDVAAALA
TAKLGNGSVVVGFARLDDADTFTLGSAAGRSTSTPGKAKRDLYIVDGKYNITKDVKVGASYYLLNVDQKAGDNFVPTSTT
QTYDYMRHTFGVNAEAKFAPLTLDGFLLYQTARTNGPDKIDQKGWAANLTGKGKLGPGTLKASFLYASGDSKRGTVRDDN
TYYGITNETSGANGEHSFYESDMMILFRNKYNITGDRAIVYNVTNVIGGFVGYNANITPKAFANVNAGFVAAATGNDDFG
SARVTIGGHKSDYLGTEINGEIGYKVFDNLTASLQGAYVFLGDYYKDTVGTAANPQTPRDPYEGRIMLNYAF
>Mature_472_residues
MKKKVLAVSAACALTAATAVPALALENEFHGMFRVFGTMSNFNDGGSGRLLPTDATTGRDPKTRSFVEQRARLMYIAKAN
DDLKLVTHFEIDSRWGDNSYANGRNSGGAIGADTVNLETKNVYLDFNIPSTPMNFKVGIQPLVDSYKGVFFNTDVAAALA
TAKLGNGSVVVGFARLDDADTFTLGSAAGRSTSTPGKAKRDLYIVDGKYNITKDVKVGASYYLLNVDQKAGDNFVPTSTT
QTYDYMRHTFGVNAEAKFAPLTLDGFLLYQTARTNGPDKIDQKGWAANLTGKGKLGPGTLKASFLYASGDSKRGTVRDDN
TYYGITNETSGANGEHSFYESDMMILFRNKYNITGDRAIVYNVTNVIGGFVGYNANITPKAFANVNAGFVAAATGNDDFG
SARVTIGGHKSDYLGTEINGEIGYKVFDNLTASLQGAYVFLGDYYKDTVGTAANPQTPRDPYEGRIMLNYAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50846; Mature: 50846

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKVLAVSAACALTAATAVPALALENEFHGMFRVFGTMSNFNDGGSGRLLPTDATTGRD
CCCEEEEEEHHHHHHHHHHHHHEEECHHHHHHEEEEECCCCCCCCCCCCEEECCCCCCCC
PKTRSFVEQRARLMYIAKANDDLKLVTHFEIDSRWGDNSYANGRNSGGAIGADTVNLETK
CCHHHHHHHCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCEECCEEEEEEEE
NVYLDFNIPSTPMNFKVGIQPLVDSYKGVFFNTDVAAALATAKLGNGSVVVGFARLDDAD
EEEEEEECCCCCCEEEECCHHHHHCCCCEEEECHHHHHHHHEECCCCCEEEEEEEECCCC
TFTLGSAAGRSTSTPGKAKRDLYIVDGKYNITKDVKVGASYYLLNVDQKAGDNFVPTSTT
EEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEECCEEEEEEECHHCCCCCCCCCCC
QTYDYMRHTFGVNAEAKFAPLTLDGFLLYQTARTNGPDKIDQKGWAANLTGKGKLGPGTL
HHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
KASFLYASGDSKRGTVRDDNTYYGITNETSGANGEHSFYESDMMILFRNKYNITGDRAIV
EEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCEEEEEECCCCCCCCCEEE
YNVTNVIGGFVGYNANITPKAFANVNAGFVAAATGNDDFGSARVTIGGHKSDYLGTEING
EEHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEECC
EIGYKVFDNLTASLQGAYVFLGDYYKDTVGTAANPQTPRDPYEGRIMLNYAF
CCCEEEHHCHHHCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKKKVLAVSAACALTAATAVPALALENEFHGMFRVFGTMSNFNDGGSGRLLPTDATTGRD
CCCEEEEEEHHHHHHHHHHHHHEEECHHHHHHEEEEECCCCCCCCCCCCEEECCCCCCCC
PKTRSFVEQRARLMYIAKANDDLKLVTHFEIDSRWGDNSYANGRNSGGAIGADTVNLETK
CCHHHHHHHCCEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCEECCEEEEEEEE
NVYLDFNIPSTPMNFKVGIQPLVDSYKGVFFNTDVAAALATAKLGNGSVVVGFARLDDAD
EEEEEEECCCCCCEEEECCHHHHHCCCCEEEECHHHHHHHHEECCCCCEEEEEEEECCCC
TFTLGSAAGRSTSTPGKAKRDLYIVDGKYNITKDVKVGASYYLLNVDQKAGDNFVPTSTT
EEEECCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEECCEEEEEEECHHCCCCCCCCCCC
QTYDYMRHTFGVNAEAKFAPLTLDGFLLYQTARTNGPDKIDQKGWAANLTGKGKLGPGTL
HHHHHHHHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE
KASFLYASGDSKRGTVRDDNTYYGITNETSGANGEHSFYESDMMILFRNKYNITGDRAIV
EEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCEEEEEECCCCCCCCCEEE
YNVTNVIGGFVGYNANITPKAFANVNAGFVAAATGNDDFGSARVTIGGHKSDYLGTEING
EEHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEECC
EIGYKVFDNLTASLQGAYVFLGDYYKDTVGTAANPQTPRDPYEGRIMLNYAF
CCCEEEHHCHHHCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA