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The map label for this gene is ccsA [H]

Identifier: 78224423

GI number: 78224423

Start: 3637343

End: 3638158

Strand: Direct

Name: ccsA [H]

Synonym: Gmet_3232

Alternate gene names: 78224423

Gene position: 3637343-3638158 (Clockwise)

Preceding gene: 78224422

Following gene: 78224424

Centisome position: 90.99

GC content: 58.46

Gene sequence:

>816_bases
ATGAACGCCCTGTTCTTCAAACTGACCCTGGCCATCTACTTCGCAGCCACCATTGCCTACCTGGCTTACCTCGTCAAACC
CCGGGAAGTACTCGGCAAGGTTTCCTGCTGGATTCTCTCGGCGGGGTTCGTGGCTCACTGTGCCTACACGGTCGACCGGT
ACCTGGAGGCGGGACACACTCCCATCACCAACCTCCACGAGTCCCTCTCCTTCTTCAGTCTTGCCGTTGTAGGCATCTAC
ATCCTCTTCGAGCGGAAATACCGGATCTTCATCCTCGGCTCCTTCGTCACCCCTGTGGCATTCCTGCTCATGGCGGCCTC
CACCGGCTTTCCCTCGGCCATCATGCCGTTGAATCCGGCCCTCAAGAGCAAATGGCTCATGGTCCACACGGTCATGGCGT
TCCTGAGTTACGCCGCCTTCTCCGTTGCCTTTGGCGCCGCCATCATGTACCTGATCCAGCAGCATTTCCTCAAGAGCAAG
AAGCTGGGCCCCATGTACCAGAAGCTTCCTTCCCTGGACATACTGGACGAGATCAACTATCGCTGCCTCACCATCGGGTT
CCCGCTTCTCACCTTCGCCATCATCTCGGGTGCCATCTGGGCTGAATCCGCGTGGGGAACCTACTGGAGCTGGGACCCGA
AGGAAACCTGGTCCCTCATCACCTGGTTCGTCTACGCGGCGCTGCTCCACGGCAGGCTAACCACCGGATGGAGGGGAAAG
AAGGCCGCCATTCTCGCCATTGTCGGCTTCTTCGTCCTCCTGTTCACCTTCCTCGGCGTGAACCTGTTCCTGTCGGGGCT
GCACAGTTACAAATAA

Upstream 100 bases:

>100_bases
TCCGGCGGGGGGAATACGAAACGATCGACCGCCTCCTCGTGACCCACGCCGGCCCCGGTTTTACCCTGGCCTCGCTGGGA
ACGAGGACCGAGGACCCCGC

Downstream 100 bases:

>100_bases
GAAGTCAGAGGATCCCATGAACATTGTGGTTGTGGGGCTGTCACACAAGACCGCCTCCGTCGATATACGGGAAAAAGTCG
CCTTCGCACCGACACAGATG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNALFFKLTLAIYFAATIAYLAYLVKPREVLGKVSCWILSAGFVAHCAYTVDRYLEAGHTPITNLHESLSFFSLAVVGIY
ILFERKYRIFILGSFVTPVAFLLMAASTGFPSAIMPLNPALKSKWLMVHTVMAFLSYAAFSVAFGAAIMYLIQQHFLKSK
KLGPMYQKLPSLDILDEINYRCLTIGFPLLTFAIISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRLTTGWRGK
KAAILAIVGFFVLLFTFLGVNLFLSGLHSYK

Sequences:

>Translated_271_residues
MNALFFKLTLAIYFAATIAYLAYLVKPREVLGKVSCWILSAGFVAHCAYTVDRYLEAGHTPITNLHESLSFFSLAVVGIY
ILFERKYRIFILGSFVTPVAFLLMAASTGFPSAIMPLNPALKSKWLMVHTVMAFLSYAAFSVAFGAAIMYLIQQHFLKSK
KLGPMYQKLPSLDILDEINYRCLTIGFPLLTFAIISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRLTTGWRGK
KAAILAIVGFFVLLFTFLGVNLFLSGLHSYK
>Mature_271_residues
MNALFFKLTLAIYFAATIAYLAYLVKPREVLGKVSCWILSAGFVAHCAYTVDRYLEAGHTPITNLHESLSFFSLAVVGIY
ILFERKYRIFILGSFVTPVAFLLMAASTGFPSAIMPLNPALKSKWLMVHTVMAFLSYAAFSVAFGAAIMYLIQQHFLKSK
KLGPMYQKLPSLDILDEINYRCLTIGFPLLTFAIISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRLTTGWRGK
KAAILAIVGFFVLLFTFLGVNLFLSGLHSYK

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=168, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30437; Mature: 30437

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA