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The map label for this gene is (hspc4-1 [H]

Identifier: 78224179

GI number: 78224179

Start: 3373130

End: 3373573

Strand: Direct

Name: (hspc4-1 [H]

Synonym: Gmet_2986

Alternate gene names: 78224179

Gene position: 3373130-3373573 (Clockwise)

Preceding gene: 78224178

Following gene: 78224185

Centisome position: 84.38

GC content: 58.11

Gene sequence:

>444_bases
ATGGCAATCGTCAAGTACACCCCGTTTGGGGACCTCAGGAATCTGCAGGAGCAGATGAACCGGCTTCTGGACATGGCGTG
GAGCAGGGAGAGCGGCGAAGAACTCCGCGAAGGGGTATGGCAGCCGCCGGTGGACATCTTCGAGGATGAAAACGGCGTCG
TCATCAAGGCCGAACTCCCCGGCATCGACCAGAAGGACATCGAGGTAAAAATCGAGGACAACACCCTCACCATCCGGGGC
GAGCGCAAGCACGACCAGGAAGTGAAGAAGGAGAACTACCATCGGGTTGAGCGGTACTACGGCTCCTTCATGCGGAGCTT
CTCGCTCCCCACCACCATCGACCGCGATACCGTCAAGGCGGTCTGCGACAAGGGAATCCTGACTATAACCCTTCCCCGGC
GCGAGGAAACCAAGCCGAAGCAGATCAACGTGGAAGTGAAATAA

Upstream 100 bases:

>100_bases
AATGAGGGGGGAGGAACGCAAACGGGCGTCCTCCCCCCTTGACTGTGGCGGATGAGTGATTATGTTATGGGTAACACAAC
CACCAGGAGGTGCATGAACC

Downstream 100 bases:

>100_bases
AGCCGGGACCAGGGATCGGGGACCAGCAAGAAGCAAAAGATTTTCCCGGTCCCTAATCCCCGGTTTTCCCGGTCCCTAAT
CCCCGGTTTTCCCGGTCCCT

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MAIVKYTPFGDLRNLQEQMNRLLDMAWSRESGEELREGVWQPPVDIFEDENGVVIKAELPGIDQKDIEVKIEDNTLTIRG
ERKHDQEVKKENYHRVERYYGSFMRSFSLPTTIDRDTVKAVCDKGILTITLPRREETKPKQINVEVK

Sequences:

>Translated_147_residues
MAIVKYTPFGDLRNLQEQMNRLLDMAWSRESGEELREGVWQPPVDIFEDENGVVIKAELPGIDQKDIEVKIEDNTLTIRG
ERKHDQEVKKENYHRVERYYGSFMRSFSLPTTIDRDTVKAVCDKGILTITLPRREETKPKQINVEVK
>Mature_146_residues
AIVKYTPFGDLRNLQEQMNRLLDMAWSRESGEELREGVWQPPVDIFEDENGVVIKAELPGIDQKDIEVKIEDNTLTIRGE
RKHDQEVKKENYHRVERYYGSFMRSFSLPTTIDRDTVKAVCDKGILTITLPRREETKPKQINVEVK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17193; Mature: 17062

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVKYTPFGDLRNLQEQMNRLLDMAWSRESGEELREGVWQPPVDIFEDENGVVIKAELP
CEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHEECCCCEEEEEECC
GIDQKDIEVKIEDNTLTIRGERKHDQEVKKENYHRVERYYGSFMRSFSLPTTIDRDTVKA
CCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VCDKGILTITLPRREETKPKQINVEVK
HHCCCCEEEEECCCCCCCCCEEEEEEC
>Mature Secondary Structure 
AIVKYTPFGDLRNLQEQMNRLLDMAWSRESGEELREGVWQPPVDIFEDENGVVIKAELP
EEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHEECCCCEEEEEECC
GIDQKDIEVKIEDNTLTIRGERKHDQEVKKENYHRVERYYGSFMRSFSLPTTIDRDTVKA
CCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
VCDKGILTITLPRREETKPKQINVEVK
HHCCCCEEEEECCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA