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The map label for this gene is recO

Identifier: 78224139

GI number: 78224139

Start: 3333458

End: 3334192

Strand: Reverse

Name: recO

Synonym: Gmet_2943

Alternate gene names: 78224139

Gene position: 3334192-3333458 (Counterclockwise)

Preceding gene: 78224141

Following gene: 78224138

Centisome position: 83.41

GC content: 68.16

Gene sequence:

>735_bases
ATGGAATCGACCCGCACCGAAGCCATCGTTCTCGCCGCCATGGACTACCGGGAGAGCGACCGCATCGTCACCCTCTTCAC
GCTTCAGTACGGAAAGGTGCGGGGGGTGGCAAAGGGGGCCAAGCGGAGCGCCCGCCGCTTCGGCCCGGCCCTGGAGCCCT
TCGCCCGCATCGGCGTGGAGCTGGTGGTGCGGGAAGGGCTCTCCTCGCTCCGGGGGGCCGATATCGTCACCCTCTATCCC
GGCATCCGGCGTGACCTCCGCGCCATCGGCCTCGCCGGCTACGCCGTGGAGCTCGTGGACCGCTACCTTCCCGACGGGGC
GCCGAGCCCCCGGCTCTTCCGGCTTCTGTCCTCCTATCTGGAGCGGCTCGACCAGGGGGAACCGCTGCCGTCGGACCGCC
GCTTCTTCGAGGCCAACTTCCTCAATATCCTCGGCTACCGGATATCTCTGGACCATTGCGCCTCCTGCGGCGTGGAGCTT
CCGGCAACTGCCGAGCGGCGCACCGGAGCATCGGGGATGATCCTCTGTGCCAATTGCGGTCGGTACGGCGCATCGGTCGG
GCCGGAAGCCGCGGCGCTCCTGGGCCGATGCATCGCCACGGGGCGGTTCGGGGCTGTGCTCTTCTCCCCTCAGTCCCTGC
GGGAGGCCGGTACCCTCCTGGACGGCGCCATTGCCGCCCACCTCACCCGTCCCCTCAACTCTCTCGCCTTTCTGAAACAG
ATTGAACCCGATTAA

Upstream 100 bases:

>100_bases
CATGGTCCGACCGGCCCGGTCAAGAGGGGAGAGTATTATTTCCGTCCAATGTTGTGGCTGCCGTTGACGGAGGGCGCAAT
CCGGTGCTACCTTGTGCGCC

Downstream 100 bases:

>100_bases
TCCTTGACACGACCCGCCGGACAATGTAATCTTTCCGACTCTAATTGCCCGTAACTTGGACTGTTTTTAAGTTTCATCAA
ACACTGTTTATAACGGGTAA

Product: recombination protein O, RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MESTRTEAIVLAAMDYRESDRIVTLFTLQYGKVRGVAKGAKRSARRFGPALEPFARIGVELVVREGLSSLRGADIVTLYP
GIRRDLRAIGLAGYAVELVDRYLPDGAPSPRLFRLLSSYLERLDQGEPLPSDRRFFEANFLNILGYRISLDHCASCGVEL
PATAERRTGASGMILCANCGRYGASVGPEAAALLGRCIATGRFGAVLFSPQSLREAGTLLDGAIAAHLTRPLNSLAFLKQ
IEPD

Sequences:

>Translated_244_residues
MESTRTEAIVLAAMDYRESDRIVTLFTLQYGKVRGVAKGAKRSARRFGPALEPFARIGVELVVREGLSSLRGADIVTLYP
GIRRDLRAIGLAGYAVELVDRYLPDGAPSPRLFRLLSSYLERLDQGEPLPSDRRFFEANFLNILGYRISLDHCASCGVEL
PATAERRTGASGMILCANCGRYGASVGPEAAALLGRCIATGRFGAVLFSPQSLREAGTLLDGAIAAHLTRPLNSLAFLKQ
IEPD
>Mature_244_residues
MESTRTEAIVLAAMDYRESDRIVTLFTLQYGKVRGVAKGAKRSARRFGPALEPFARIGVELVVREGLSSLRGADIVTLYP
GIRRDLRAIGLAGYAVELVDRYLPDGAPSPRLFRLLSSYLERLDQGEPLPSDRRFFEANFLNILGYRISLDHCASCGVEL
PATAERRTGASGMILCANCGRYGASVGPEAAALLGRCIATGRFGAVLFSPQSLREAGTLLDGAIAAHLTRPLNSLAFLKQ
IEPD

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_GEOMG (Q39RG3)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_385886.1
- ProteinModelPortal:   Q39RG3
- STRING:   Q39RG3
- GeneID:   3740837
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_2943
- NMPDR:   fig|269799.3.peg.3230
- eggNOG:   COG1381
- HOGENOM:   HBG634481
- OMA:   ARGGIVC
- PhylomeDB:   Q39RG3
- ProtClustDB:   CLSK827924
- BioCyc:   GMET269799:GMET_2943-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26430; Mature: 26430

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTRTEAIVLAAMDYRESDRIVTLFTLQYGKVRGVAKGAKRSARRFGPALEPFARIGVE
CCCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LVVREGLSSLRGADIVTLYPGIRRDLRAIGLAGYAVELVDRYLPDGAPSPRLFRLLSSYL
HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ERLDQGEPLPSDRRFFEANFLNILGYRISLDHCASCGVELPATAERRTGASGMILCANCG
HHHHCCCCCCCCHHHHHHHHHHHHHHEECHHHHHHCCCCCCCCCHHCCCCCCEEEEECCC
RYGASVGPEAAALLGRCIATGRFGAVLFSPQSLREAGTLLDGAIAAHLTRPLNSLAFLKQ
CCCCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEPD
CCCC
>Mature Secondary Structure
MESTRTEAIVLAAMDYRESDRIVTLFTLQYGKVRGVAKGAKRSARRFGPALEPFARIGVE
CCCCCCCEEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
LVVREGLSSLRGADIVTLYPGIRRDLRAIGLAGYAVELVDRYLPDGAPSPRLFRLLSSYL
HHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ERLDQGEPLPSDRRFFEANFLNILGYRISLDHCASCGVELPATAERRTGASGMILCANCG
HHHHCCCCCCCCHHHHHHHHHHHHHHEECHHHHHHCCCCCCCCCHHCCCCCCEEEEECCC
RYGASVGPEAAALLGRCIATGRFGAVLFSPQSLREAGTLLDGAIAAHLTRPLNSLAFLKQ
CCCCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEPD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA