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The map label for this gene is arnC [H]

Identifier: 78224088

GI number: 78224088

Start: 3272449

End: 3273438

Strand: Reverse

Name: arnC [H]

Synonym: Gmet_2892

Alternate gene names: 78224088

Gene position: 3273438-3272449 (Counterclockwise)

Preceding gene: 78224089

Following gene: 78224087

Centisome position: 81.89

GC content: 60.71

Gene sequence:

>990_bases
GTGAAACTGAGTATCGTTATACCGATTTACAACGAAGAAGAGAACATTCCCCCTCTCTATGGACGGGTTACCGAAGCACT
GGCCGGGACGGGCATCGACTATGAGCTGATCCTGGTGGACGACGGCTCCAGCGACGGCTCTTTCCCGCTTCTGCGGCAGA
TTGCCGAGAGGGATTCGCGGGTGAAGGTGATCCGCTTCCGCCGCAATTTCGGGCAGACAGCGGCCATGGCCGCCGGCTTC
GACGCCGCCCGGGGAGAAGTTGTCGTCCCCATGGATGGCGACCTTCAGAACGACCCGGCCGACATCCCCATGCTCCTGTC
GAAGATCAACGAAGGGTACGACGTGGTCTCGGGCTGGCGCAAGGACCGACAGGACACCTTCATCAACCGCCGGCTTCCCT
CCATCATTGCCAACGGCCTCATCTCCCGCATGACCGGGGTCCACCTCCACGACTACGGCTGCACCCTCAAGGCCTACCGC
CGGGAAGTCCTCGACGGGGTGAACCTCTACGGCGAGATGCACCGCTTCGTGCCGGCCCTGGCCTCCCAAGTGGGGGCGCG
GGTGACGGAGCTGCCGGTGCGGCATCATCCGCGGCTCCACGGCACGAGCAAGTACGGCATCTCCCGCACCATGCGGGTGG
TCCTCGACCTCATGACGGTGAAATTTCTCCTCGCCTACTCCACCAAGCCGATCCAGCTCTTCGGCAAGTGGGGGATTTAT
ACCTTGTTTGCGGGCTTTCTCAGCGGGGGAGCAACCCTCTATTTCAAGTTTTTCGAGCATATCAACATGAATCGCAACCC
TCTCCTCATCCTCACCGCGTTCCTGCTCTTTATGGGGGTGCAGTTCATCGTTCTCGGCCTTCTCGGCGAGCTTAACGCCC
GCACCTATTACGAAGCGCAGGGGAAACCGATTTACGTGATTCGCGAGCGAATCAACGTAGGGGACCGGGGACCGGGGACC
GGGGACCGGGAAAATCGCAAAGACTTATGA

Upstream 100 bases:

>100_bases
GCATGGAATACCCTAGCGAGGCCGCGGATGTTCAGGCATCTCTTCCGGCCCTGCGTGAGCGGCTTGCCTTGCAGAAGACG
AATCTCCAGTGAGGTCCTTG

Downstream 100 bases:

>100_bases
CCGTCAGGAGGATTTGTGCGGGATCATAAGGAGTTGGATGTTTGGAAAACGGGTGTTGAGCTGGTGACGTCGGTTTATGT
TGCGACTCAGTCGTTTCCGA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKLSIVIPIYNEEENIPPLYGRVTEALAGTGIDYELILVDDGSSDGSFPLLRQIAERDSRVKVIRFRRNFGQTAAMAAGF
DAARGEVVVPMDGDLQNDPADIPMLLSKINEGYDVVSGWRKDRQDTFINRRLPSIIANGLISRMTGVHLHDYGCTLKAYR
REVLDGVNLYGEMHRFVPALASQVGARVTELPVRHHPRLHGTSKYGISRTMRVVLDLMTVKFLLAYSTKPIQLFGKWGIY
TLFAGFLSGGATLYFKFFEHINMNRNPLLILTAFLLFMGVQFIVLGLLGELNARTYYEAQGKPIYVIRERINVGDRGPGT
GDRENRKDL

Sequences:

>Translated_329_residues
MKLSIVIPIYNEEENIPPLYGRVTEALAGTGIDYELILVDDGSSDGSFPLLRQIAERDSRVKVIRFRRNFGQTAAMAAGF
DAARGEVVVPMDGDLQNDPADIPMLLSKINEGYDVVSGWRKDRQDTFINRRLPSIIANGLISRMTGVHLHDYGCTLKAYR
REVLDGVNLYGEMHRFVPALASQVGARVTELPVRHHPRLHGTSKYGISRTMRVVLDLMTVKFLLAYSTKPIQLFGKWGIY
TLFAGFLSGGATLYFKFFEHINMNRNPLLILTAFLLFMGVQFIVLGLLGELNARTYYEAQGKPIYVIRERINVGDRGPGT
GDRENRKDL
>Mature_329_residues
MKLSIVIPIYNEEENIPPLYGRVTEALAGTGIDYELILVDDGSSDGSFPLLRQIAERDSRVKVIRFRRNFGQTAAMAAGF
DAARGEVVVPMDGDLQNDPADIPMLLSKINEGYDVVSGWRKDRQDTFINRRLPSIIANGLISRMTGVHLHDYGCTLKAYR
REVLDGVNLYGEMHRFVPALASQVGARVTELPVRHHPRLHGTSKYGISRTMRVVLDLMTVKFLLAYSTKPIQLFGKWGIY
TLFAGFLSGGATLYFKFFEHINMNRNPLLILTAFLLFMGVQFIVLGLLGELNARTYYEAQGKPIYVIRERINVGDRGPGT
GDRENRKDL

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=235, Percent_Identity=29.3617021276596, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1788588, Length=312, Percent_Identity=37.5, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1788692, Length=308, Percent_Identity=28.5714285714286, Blast_Score=138, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI71999402, Length=218, Percent_Identity=27.9816513761468, Blast_Score=74, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6325441, Length=112, Percent_Identity=33.0357142857143, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24585265, Length=229, Percent_Identity=27.9475982532751, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 36972; Mature: 36972

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSIVIPIYNEEENIPPLYGRVTEALAGTGIDYELILVDDGSSDGSFPLLRQIAERDSR
CEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCC
VKVIRFRRNFGQTAAMAAGFDAARGEVVVPMDGDLQNDPADIPMLLSKINEGYDVVSGWR
EEEEEEHHHCCCHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
KDRQDTFINRRLPSIIANGLISRMTGVHLHDYGCTLKAYRREVLDGVNLYGEMHRFVPAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQVGARVTELPVRHHPRLHGTSKYGISRTMRVVLDLMTVKFLLAYSTKPIQLFGKWGIY
HHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHH
TLFAGFLSGGATLYFKFFEHINMNRNPLLILTAFLLFMGVQFIVLGLLGELNARTYYEAQ
HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
GKPIYVIRERINVGDRGPGTGDRENRKDL
CCEEEEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLSIVIPIYNEEENIPPLYGRVTEALAGTGIDYELILVDDGSSDGSFPLLRQIAERDSR
CEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCC
VKVIRFRRNFGQTAAMAAGFDAARGEVVVPMDGDLQNDPADIPMLLSKINEGYDVVSGWR
EEEEEEHHHCCCHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
KDRQDTFINRRLPSIIANGLISRMTGVHLHDYGCTLKAYRREVLDGVNLYGEMHRFVPAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASQVGARVTELPVRHHPRLHGTSKYGISRTMRVVLDLMTVKFLLAYSTKPIQLFGKWGIY
HHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHH
TLFAGFLSGGATLYFKFFEHINMNRNPLLILTAFLLFMGVQFIVLGLLGELNARTYYEAQ
HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
GKPIYVIRERINVGDRGPGTGDRENRKDL
CCEEEEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA