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The map label for this gene is rbn [C]

Identifier: 78223975

GI number: 78223975

Start: 3143176

End: 3144537

Strand: Reverse

Name: rbn [C]

Synonym: Gmet_2779

Alternate gene names: 78223975

Gene position: 3144537-3143176 (Counterclockwise)

Preceding gene: 78223976

Following gene: 78223974

Centisome position: 78.66

GC content: 61.97

Gene sequence:

>1362_bases
ATGGCGCAAAGAGAAACTGCGGTGGACAGGATCATAGGGTTTTTCACCCATGCCCTCTGGGAGATGGAGCCCGACTCCTT
TGGCCCGGTGAAGGGGCGCCTGCTGCGGTGTCTGCAGATCGGCGCCCTGGTGGTCAAGGACTTTCTGGACGACCAGTGCC
TCATCCGGGCTTCAGCCCTGGCCTTCTCCACCCTCCTCTCCATCGTCCCGTTCTTTGCCCTTGCTTTCGCGGTATTGAAG
GGGTTTGGAGTCCAGAACACCCTGGAACCGTTTATCCTCGACCAGGTGGCAGCCGGCTCCCACGAGATCGTCGACAAGAT
CGTCGCCTACATCAACAACACCAAGGTCGGATCCCTCGGCGCCATCGGCCTTGCGGCCCTCTTTGTCACGGTCGTGACGC
TCCTCGGCAACGTCGAGGAGGCCTTCAACGCCATCTGGGGGGTCCGGGAGACCCGTTCCCTCTACCGCAAGTTCAGTGAT
TACCTGAGTGTGCTGGTGAGCGGCCCGATCCTTCTTTTTGCCGCGGTGAGCACGACCACCACCATTGAAAGCCAGGCGTT
CGTCCAGTGGATCATGGGATACACGTATCTCGGCGATGCGCTGCTGGCCCTTTTTCGCCTGGTTCCCTACCTCAGCATCT
GGATCGCCCTCGTCTTTCTCTACATGTTCATCCCCAATACCAAAGTCCGCTTCCGCTCGGCCCTTGTGGGAGGGATTATC
GCCGGTACGATCTGGCAGGGCGCCCAGTGGGGGTACATCCACTTTCAGGTGGGGGTGGCAAAGTACAACGCCATCTACGG
GACACTGGCGGTGCTGCCGGTCTTCATGGTCTGGCTGTACGCCAGCTGGGTCATTGTTCTTCTGGGGGGGGAAGTGGTTT
ACGCCCATCAACACCTGCGGACCTTCCGGCGCGAAGTGCGCACCCCCGCCATCAGCAACGCGGCCCGGGAGCGCCTGGCC
TTGGCCGTCATCTACGAGATTTCCCTGGCGTTCCATAATGATCGCCCGCCCTGGAGCATCACCGGGCTTGCCGAGCACCT
CGATGTGCCTGAGCGTTCCGTGAGGGAGCTCCTCGAATGTCTGGAAGACGAAGGAGTCCTGGCGGCGGGGTGCGGCGATG
ATCCCCTCTACCTGCCGGCCCGGGACCTGGAGCACATCAGGGTCGGGGAGGTGCTCTCCTCCCTGAGGAATCAGGGAGTC
GGGCTGCCCGGCCAGCTGGGAGGAGAGGATCATGTTGTCGTGGACGATCTCTGGGAAGCCATCGAGGCGGCGGTTCGGAG
TGCCCTGGGTGATCTGAGTTTTCGGGACCTGGCGGAGCGGGTGCCGTTGGCAGGTGAACCTCTGTCGAGGCGCGATTCAT
GA

Upstream 100 bases:

>100_bases
AAAGAAAAGTACGGACAGATGTAGCAGCCTCCGGTTTATGCACGAAAAAGCCCACCTCGCGTGGGCTTTTTCGTAAGCAG
GGCCGTCCGGTGCGGGAGCC

Downstream 100 bases:

>100_bases
GAGGTTGGTAACGGGGGCCGTCGTTGACAAAGGGAGGGGTTTTGCATATAGTGACGGCAATGTAACCGCCATGAATTTCA
TGTATTCACGCCTGTTTCGG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MAQRETAVDRIIGFFTHALWEMEPDSFGPVKGRLLRCLQIGALVVKDFLDDQCLIRASALAFSTLLSIVPFFALAFAVLK
GFGVQNTLEPFILDQVAAGSHEIVDKIVAYINNTKVGSLGAIGLAALFVTVVTLLGNVEEAFNAIWGVRETRSLYRKFSD
YLSVLVSGPILLFAAVSTTTTIESQAFVQWIMGYTYLGDALLALFRLVPYLSIWIALVFLYMFIPNTKVRFRSALVGGII
AGTIWQGAQWGYIHFQVGVAKYNAIYGTLAVLPVFMVWLYASWVIVLLGGEVVYAHQHLRTFRREVRTPAISNAARERLA
LAVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLECLEDEGVLAAGCGDDPLYLPARDLEHIRVGEVLSSLRNQGV
GLPGQLGGEDHVVVDDLWEAIEAAVRSALGDLSFRDLAERVPLAGEPLSRRDS

Sequences:

>Translated_453_residues
MAQRETAVDRIIGFFTHALWEMEPDSFGPVKGRLLRCLQIGALVVKDFLDDQCLIRASALAFSTLLSIVPFFALAFAVLK
GFGVQNTLEPFILDQVAAGSHEIVDKIVAYINNTKVGSLGAIGLAALFVTVVTLLGNVEEAFNAIWGVRETRSLYRKFSD
YLSVLVSGPILLFAAVSTTTTIESQAFVQWIMGYTYLGDALLALFRLVPYLSIWIALVFLYMFIPNTKVRFRSALVGGII
AGTIWQGAQWGYIHFQVGVAKYNAIYGTLAVLPVFMVWLYASWVIVLLGGEVVYAHQHLRTFRREVRTPAISNAARERLA
LAVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLECLEDEGVLAAGCGDDPLYLPARDLEHIRVGEVLSSLRNQGV
GLPGQLGGEDHVVVDDLWEAIEAAVRSALGDLSFRDLAERVPLAGEPLSRRDS
>Mature_452_residues
AQRETAVDRIIGFFTHALWEMEPDSFGPVKGRLLRCLQIGALVVKDFLDDQCLIRASALAFSTLLSIVPFFALAFAVLKG
FGVQNTLEPFILDQVAAGSHEIVDKIVAYINNTKVGSLGAIGLAALFVTVVTLLGNVEEAFNAIWGVRETRSLYRKFSDY
LSVLVSGPILLFAAVSTTTTIESQAFVQWIMGYTYLGDALLALFRLVPYLSIWIALVFLYMFIPNTKVRFRSALVGGIIA
GTIWQGAQWGYIHFQVGVAKYNAIYGTLAVLPVFMVWLYASWVIVLLGGEVVYAHQHLRTFRREVRTPAISNAARERLAL
AVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLECLEDEGVLAAGCGDDPLYLPARDLEHIRVGEVLSSLRNQGVG
LPGQLGGEDHVVVDDLWEAIEAAVRSALGDLSFRDLAERVPLAGEPLSRRDS

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=261, Percent_Identity=29.1187739463602, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 49938; Mature: 49807

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQRETAVDRIIGFFTHALWEMEPDSFGPVKGRLLRCLQIGALVVKDFLDDQCLIRASAL
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AFSTLLSIVPFFALAFAVLKGFGVQNTLEPFILDQVAAGSHEIVDKIVAYINNTKVGSLG
HHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
AIGLAALFVTVVTLLGNVEEAFNAIWGVRETRSLYRKFSDYLSVLVSGPILLFAAVSTTT
HHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
TIESQAFVQWIMGYTYLGDALLALFRLVPYLSIWIALVFLYMFIPNTKVRFRSALVGGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
AGTIWQGAQWGYIHFQVGVAKYNAIYGTLAVLPVFMVWLYASWVIVLLGGEVVYAHQHLR
HHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
TFRREVRTPAISNAARERLALAVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLEC
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHCCCCHHHHHHHHHH
LEDEGVLAAGCGDDPLYLPARDLEHIRVGEVLSSLRNQGVGLPGQLGGEDHVVVDDLWEA
HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHH
IEAAVRSALGDLSFRDLAERVPLAGEPLSRRDS
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AQRETAVDRIIGFFTHALWEMEPDSFGPVKGRLLRCLQIGALVVKDFLDDQCLIRASAL
CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH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HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA