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The map label for this gene is rbpE [H]

Identifier: 78223828

GI number: 78223828

Start: 2978842

End: 2979246

Strand: Direct

Name: rbpE [H]

Synonym: Gmet_2631

Alternate gene names: 78223828

Gene position: 2978842-2979246 (Clockwise)

Preceding gene: 78223825

Following gene: 78223832

Centisome position: 74.52

GC content: 66.42

Gene sequence:

>405_bases
ATGAGCGCAAACAAGGAACTCTATGTGGGACACATGTCCTACGAAGCCACTGAAGACGACCTCCGGCGACTCTTTACGGT
GGCCGGCACCGTCACGTCGGTCCACCTGATCACCGACCGCGATACCGGCGAATTCAAGGGGTGCGGCTACGTGCGGATGG
CCACGATCGAAGAGGCAAAAGAAGCCGTCGAGACCCTGGACGGTGCTTTGCTGAGAAACCGGGCCATCACCGTGACCCTG
GCGCGCCCCCAGAAGCAGACCACCCGCCCCGGCGGCAGGGGCGGCAAAGGGGGACCTGGCCCACGAACCGGCGGCAGCCG
CGGGAAAGGCGGCCCCGCCGCCGGCAGCGGTGGTCCCCGCGGGAAGAGCGGTCCGGGCACCAGACCCGCAAGAGGCAAGA
AATAA

Upstream 100 bases:

>100_bases
GCCGCCAGGGGGGCAATTCCTTTTTCCACCGCGGGTTTTCCGGAAAAGCCCCTTTCCCTTTCCGCCCCCGATCTGGTACC
ATCGGCCAAAAGGAGACATC

Downstream 100 bases:

>100_bases
GTCCCGCCGCCGCTCGGGCTCGGAGGATAGACTGATCTATCTGAGCCTGAGCGGCACGCTCCGAGAAGCCCTATCCAGCA
CTATCGCCGCAGCCTTGAAT

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSANKELYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAKEAVETLDGALLRNRAITVTL
ARPQKQTTRPGGRGGKGGPGPRTGGSRGKGGPAAGSGGPRGKSGPGTRPARGKK

Sequences:

>Translated_134_residues
MSANKELYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAKEAVETLDGALLRNRAITVTL
ARPQKQTTRPGGRGGKGGPGPRTGGSRGKGGPAAGSGGPRGKSGPGTRPARGKK
>Mature_133_residues
SANKELYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAKEAVETLDGALLRNRAITVTLA
RPQKQTTRPGGRGGKGGPGPRTGGSRGKGGPAAGSGGPRGKSGPGTRPARGKK

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=35.5263157894737, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=78, Percent_Identity=34.6153846153846, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 13939; Mature: 13808

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANKELYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAK
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHH
EAVETLDGALLRNRAITVTLARPQKQTTRPGGRGGKGGPGPRTGGSRGKGGPAAGSGGPR
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GKSGPGTRPARGKK
CCCCCCCCCCCCCC
>Mature Secondary Structure 
SANKELYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAK
CCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHH
EAVETLDGALLRNRAITVTLARPQKQTTRPGGRGGKGGPGPRTGGSRGKGGPAAGSGGPR
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GKSGPGTRPARGKK
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]