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The map label for this gene is ydiF [H]

Identifier: 78223723

GI number: 78223723

Start: 2867337

End: 2868971

Strand: Direct

Name: ydiF [H]

Synonym: Gmet_2524

Alternate gene names: 78223723

Gene position: 2867337-2868971 (Clockwise)

Preceding gene: 78223722

Following gene: 78223724

Centisome position: 71.73

GC content: 65.2

Gene sequence:

>1635_bases
ATGATTCACCTCTCGAACATCACCAAACAGCACGGCGCCCAAGTCCTGTTCCGGGACGCCAGCTTCCAGATCCTCCCTGG
CACCCGCACCGGCCTGGTTGGCCCCAACGGCGCCGGCAAGACCACCATCTTCCGGATCATCACCGGCGAAGAAGAGGTGG
ACGCCGGCGAGATGACCTGCGCGAAGAAGACGACCGTCGGCTACTTCTCCCAGGACGTGGGGGAGATGGCGGGCCGTTCT
GCCCTGGAGGAGGTCATGGCCGGCTCGGCGGAGACGGTCAGGCTCGCCGCCGAGCTAAAGGAGATGGAGGCGGCCATGTG
CGAGCCCCAATCCGACGACGAAATGGCGGCGCTCCTGGAGCGCTACGGCGCGGCCCAGGAGGAGTTCGAGCACCGGGGAG
GCTACGACCTCGACACCCGCGCCCAGACGGTTCTCACCGGCCTCGGCATCGGGCCGGACCGTTTCCATCACCCGGTGGAG
TCCTTCAGCGGCGGGTGGAAGATGCGGATCGCCCTGGCGAAGATCCTTACCCTCAAGCCCGACGTCCTTCTCCTGGACGA
GCCCACCAACCACCTGGACGTGGAGTCCATTATCTGGCTGGAGGAGTGGCTGGCCAACGACTTCGACGGGGCGCTCCTCA
TGACGAGCCACGATCGGGACTTCATGAACCGGATCGTGACCCGCATCATCGAGGTGGCCAACAGGACGGTCACCACCTAC
GGCGGCAACTACGATTTCTACGAGCGGGAGCGGGACATCCGGCGGGAGCAGCTCCTGGCAAGCCACAAGCGCCAGCAGGA
GATGCTTGCCAAGGAGGAGGAATTCATCGCCCGGTTCGCCGCCCGTGCCTCCCACGCGGCCCAGGTGCAGTCACGGGTGA
AGAAGCTGGAGAAGATCGAACGGATCGAGATCCCCGCCGAGGAGCGAATGGTCCGTTTCGAGTTCAGCGAGCCGCCGAGA
AGCGGCGAGGACGTGGTAGTGATGGAGAATCTGGGGAAGGTCTGGCAGACCCCGGACGGGGGGGAGAAACCGGTCTTCGG
CGGCGTTTCGGGCATCATCCGGCGGCTCAACAAGATCGCTGTGGTGGGGGTGAACGGCGCGGGGAAGTCTACCTTCCTCA
AAGTCCTGGCGGGGCAGACCGAGCCCACGACCGGCACCGTGACCATCGGGGCCAACGTGGAGCTGGGCTACTTCAGCCAG
CACGCCATGGAGGTTCTCGACCCGAAGAAGACCGTCTTCGAGACCGTGCAGGAGGCCATGCCCCTGGCGAACATCGGCGT
CATCCGCAACCTCCTGGCGGCCTTCCTCTTTCAGGGGGATACCGTGGACAAGCGGGTCGAAAACCTCTCCGGCGGGGAGA
AGAGCCGGGTGGTGCTGGCAACGCTCCTGGCCCGCCCCGTCAACTTCCTCGTTCTGGACGAGCCCACCAACCACCTGGAC
ATCCGCTCCCGGGAGATCCTCCTGGACGCCCTCCGGAACTTCGCCGGCACCGTGGTCATCGTGAGCCACGACCGCCACTT
CCTCCGCTCCCTGGTGGACCGGGTCTTCGAGGTGGATCACGGCGAGATGCGGGTCTACGAGGGGGATTACTCCTATTATC
TTCGCAAGAGCCACGAGCTGCACGGCCTACCCTGA

Upstream 100 bases:

>100_bases
TTCCGTCACCCGCTTCCCCTCCTTGACGAAATTTAAGTTGCTCCCCCGGTGCTCCCGTGCTAACAGCTTCTCCTTTCCAT
TTCACGCACGGGAGCACCCC

Downstream 100 bases:

>100_bases
TTCCCGCTGCACACCCATTCCGTCGCGGGCATGGTGATTGACATTCAGGTGGTAACTGTTACCGTTATCTACAGTCAAAC
CCTCGCAAAGGGAAGCATCC

Product: ABC transporter-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 544; Mature: 544

Protein sequence:

>544_residues
MIHLSNITKQHGAQVLFRDASFQILPGTRTGLVGPNGAGKTTIFRIITGEEEVDAGEMTCAKKTTVGYFSQDVGEMAGRS
ALEEVMAGSAETVRLAAELKEMEAAMCEPQSDDEMAALLERYGAAQEEFEHRGGYDLDTRAQTVLTGLGIGPDRFHHPVE
SFSGGWKMRIALAKILTLKPDVLLLDEPTNHLDVESIIWLEEWLANDFDGALLMTSHDRDFMNRIVTRIIEVANRTVTTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIERIEIPAEERMVRFEFSEPPR
SGEDVVVMENLGKVWQTPDGGEKPVFGGVSGIIRRLNKIAVVGVNGAGKSTFLKVLAGQTEPTTGTVTIGANVELGYFSQ
HAMEVLDPKKTVFETVQEAMPLANIGVIRNLLAAFLFQGDTVDKRVENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
IRSREILLDALRNFAGTVVIVSHDRHFLRSLVDRVFEVDHGEMRVYEGDYSYYLRKSHELHGLP

Sequences:

>Translated_544_residues
MIHLSNITKQHGAQVLFRDASFQILPGTRTGLVGPNGAGKTTIFRIITGEEEVDAGEMTCAKKTTVGYFSQDVGEMAGRS
ALEEVMAGSAETVRLAAELKEMEAAMCEPQSDDEMAALLERYGAAQEEFEHRGGYDLDTRAQTVLTGLGIGPDRFHHPVE
SFSGGWKMRIALAKILTLKPDVLLLDEPTNHLDVESIIWLEEWLANDFDGALLMTSHDRDFMNRIVTRIIEVANRTVTTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIERIEIPAEERMVRFEFSEPPR
SGEDVVVMENLGKVWQTPDGGEKPVFGGVSGIIRRLNKIAVVGVNGAGKSTFLKVLAGQTEPTTGTVTIGANVELGYFSQ
HAMEVLDPKKTVFETVQEAMPLANIGVIRNLLAAFLFQGDTVDKRVENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
IRSREILLDALRNFAGTVVIVSHDRHFLRSLVDRVFEVDHGEMRVYEGDYSYYLRKSHELHGLP
>Mature_544_residues
MIHLSNITKQHGAQVLFRDASFQILPGTRTGLVGPNGAGKTTIFRIITGEEEVDAGEMTCAKKTTVGYFSQDVGEMAGRS
ALEEVMAGSAETVRLAAELKEMEAAMCEPQSDDEMAALLERYGAAQEEFEHRGGYDLDTRAQTVLTGLGIGPDRFHHPVE
SFSGGWKMRIALAKILTLKPDVLLLDEPTNHLDVESIIWLEEWLANDFDGALLMTSHDRDFMNRIVTRIIEVANRTVTTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIERIEIPAEERMVRFEFSEPPR
SGEDVVVMENLGKVWQTPDGGEKPVFGGVSGIIRRLNKIAVVGVNGAGKSTFLKVLAGQTEPTTGTVTIGANVELGYFSQ
HAMEVLDPKKTVFETVQEAMPLANIGVIRNLLAAFLFQGDTVDKRVENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
IRSREILLDALRNFAGTVVIVSHDRHFLRSLVDRVFEVDHGEMRVYEGDYSYYLRKSHELHGLP

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=33.1460674157303, Blast_Score=266, Evalue=2e-71,
Organism=Homo sapiens, GI27881506, Length=540, Percent_Identity=31.6666666666667, Blast_Score=248, Evalue=1e-65,
Organism=Homo sapiens, GI10947137, Length=540, Percent_Identity=31.6666666666667, Blast_Score=248, Evalue=1e-65,
Organism=Homo sapiens, GI69354671, Length=547, Percent_Identity=30.7129798903108, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI10947135, Length=547, Percent_Identity=30.7129798903108, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI108773784, Length=171, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI108773782, Length=171, Percent_Identity=28.0701754385965, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789751, Length=533, Percent_Identity=35.6472795497186, Blast_Score=350, Evalue=9e-98,
Organism=Escherichia coli, GI1787041, Length=538, Percent_Identity=34.9442379182156, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI2367384, Length=524, Percent_Identity=31.4885496183206, Blast_Score=262, Evalue=5e-71,
Organism=Escherichia coli, GI1787182, Length=542, Percent_Identity=34.3173431734317, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=32.620320855615, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=26.6094420600858, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787758, Length=182, Percent_Identity=29.1208791208791, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081791, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789891, Length=206, Percent_Identity=24.7572815533981, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786703, Length=207, Percent_Identity=28.0193236714976, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786398, Length=186, Percent_Identity=31.1827956989247, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788225, Length=193, Percent_Identity=29.5336787564767, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788761, Length=205, Percent_Identity=28.780487804878, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=30.2325581395349, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1787164, Length=183, Percent_Identity=31.1475409836066, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=548, Percent_Identity=32.6642335766423, Blast_Score=256, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI17559834, Length=551, Percent_Identity=30.4900181488203, Blast_Score=237, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI17555318, Length=537, Percent_Identity=31.2849162011173, Blast_Score=235, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17565586, Length=239, Percent_Identity=26.7782426778243, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=173, Percent_Identity=27.1676300578035, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=32.1100917431193, Blast_Score=262, Evalue=9e-71,
Organism=Saccharomyces cerevisiae, GI6321121, Length=551, Percent_Identity=30.3085299455535, Blast_Score=260, Evalue=3e-70,
Organism=Saccharomyces cerevisiae, GI6325030, Length=395, Percent_Identity=29.3670886075949, Blast_Score=147, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6324314, Length=393, Percent_Identity=26.4631043256997, Blast_Score=124, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6323278, Length=397, Percent_Identity=26.448362720403, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24666836, Length=539, Percent_Identity=33.7662337662338, Blast_Score=289, Evalue=3e-78,
Organism=Drosophila melanogaster, GI24642252, Length=543, Percent_Identity=29.6500920810313, Blast_Score=244, Evalue=2e-64,
Organism=Drosophila melanogaster, GI18859989, Length=543, Percent_Identity=29.6500920810313, Blast_Score=244, Evalue=2e-64,
Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=29.9082568807339, Blast_Score=243, Evalue=3e-64,
Organism=Drosophila melanogaster, GI24653245, Length=204, Percent_Identity=28.921568627451, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=241, Percent_Identity=27.3858921161826, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60725; Mature: 60725

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHLSNITKQHGAQVLFRDASFQILPGTRTGLVGPNGAGKTTIFRIITGEEEVDAGEMTC
CEECCCHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEE
AKKTTVGYFSQDVGEMAGRSALEEVMAGSAETVRLAAELKEMEAAMCEPQSDDEMAALLE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RYGAAQEEFEHRGGYDLDTRAQTVLTGLGIGPDRFHHPVESFSGGWKMRIALAKILTLKP
HHCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCEEHHHHHHHHHCCC
DVLLLDEPTNHLDVESIIWLEEWLANDFDGALLMTSHDRDFMNRIVTRIIEVANRTVTTY
CEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIEIPAEERMVRFEFSEPPRSGEDVVVMENLGKVWQTPDGGEKPVFGGVSGIIRRLNKIA
HCCCCHHHCEEEEECCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHCCEE
VVGVNGAGKSTFLKVLAGQTEPTTGTVTIGANVELGYFSQHAMEVLDPKKTVFETVQEAM
EEEECCCCHHHHHHHHCCCCCCCCEEEEECCCEEECHHHHHHHHHHCCHHHHHHHHHHHC
PLANIGVIRNLLAAFLFQGDTVDKRVENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
CHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
IRSREILLDALRNFAGTVVIVSHDRHFLRSLVDRVFEVDHGEMRVYEGDYSYYLRKSHEL
CHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHEEEECCCCC
HGLP
CCCC
>Mature Secondary Structure
MIHLSNITKQHGAQVLFRDASFQILPGTRTGLVGPNGAGKTTIFRIITGEEEVDAGEMTC
CEECCCHHHHCCCEEEEECCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEE
AKKTTVGYFSQDVGEMAGRSALEEVMAGSAETVRLAAELKEMEAAMCEPQSDDEMAALLE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RYGAAQEEFEHRGGYDLDTRAQTVLTGLGIGPDRFHHPVESFSGGWKMRIALAKILTLKP
HHCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCEEHHHHHHHHHCCC
DVLLLDEPTNHLDVESIIWLEEWLANDFDGALLMTSHDRDFMNRIVTRIIEVANRTVTTY
CEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIEIPAEERMVRFEFSEPPRSGEDVVVMENLGKVWQTPDGGEKPVFGGVSGIIRRLNKIA
HCCCCHHHCEEEEECCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCHHHHHHHHCCEE
VVGVNGAGKSTFLKVLAGQTEPTTGTVTIGANVELGYFSQHAMEVLDPKKTVFETVQEAM
EEEECCCCHHHHHHHHCCCCCCCCEEEEECCCEEECHHHHHHHHHHCCHHHHHHHHHHHC
PLANIGVIRNLLAAFLFQGDTVDKRVENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
CHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
IRSREILLDALRNFAGTVVIVSHDRHFLRSLVDRVFEVDHGEMRVYEGDYSYYLRKSHEL
CHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHEEEECCCCC
HGLP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]