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The map label for this gene is tse [H]

Identifier: 78223627

GI number: 78223627

Start: 2741239

End: 2742984

Strand: Reverse

Name: tse [H]

Synonym: Gmet_2424

Alternate gene names: 78223627

Gene position: 2742984-2741239 (Counterclockwise)

Preceding gene: 78223628

Following gene: 78223626

Centisome position: 68.62

GC content: 57.39

Gene sequence:

>1746_bases
ATGAAGCTCATGAATAACATGAAGATAGGCACCAAGATTCTCGGCCTGGTAACGCTCATGCTTGCATTCATGATGACGAT
AGCCGCCTTCGGCGTTGTGAAGATGAAAGGGATTGGTGAGGAAATTGCGGGCATTGACAAGCAGGACATTCCCCTTACCG
AGGCGATCAATGAAGTAGGGAAGATCCAGATGGATGAAATGGTCCTTTTCCATCGGGCGGTGCGTCTGGGGACAAACAAC
CAGCAGGCCGAACTGAAGAAAGTGGAGGAAGCGTTCGGTAATAAGGCCAAGGAGTTTGATGCCACCCTGAAAAAGGCTGA
ACAGGTGGTGCAGCAAGCTCTCAAGGAAACGGCTGGAGATGCGGCAGTCCAGAAGGAATTCACCGAAATGGCTGAACGCC
TGAAGGTGATCGAGAAGGAATACAACGACTTTGAGAAAGTCACTCAGGAGCTCTTTTCCACCCTCGATGCCGGTAAGTTC
AGTGCAGTTACTGAACTGGAGCACCGGGTGGAAAAGGAGGGAAGTGATCTTGAGCAGGCGATAGACACGTTCCTGAAAAA
TGTCGAGAAGTTTACCAACGACTCCGTCGCCACTGCGGAAAAGGATGAGCAGATGGCCGTCAAGGCCATGATCGGGTTAA
GCCTTGTGGCCTTGGTGCTGGGGCTTGGGATCGGGATATTCATCAGCCGTGCCATTACCCGGCCATTGAAGCAAGGGGTT
GATGTGGCCACCAGGCTTGCCGGCGGCGATCTGACCATAGCCATCGACGTCACCAGCAAGGACGAGACCGGGCAGCTTCT
CGAAGCCATGGCGAACATGGTGGAAAAGCTGAAAATCGTGGTGGCGGACGTGAAATCGGCTTCCGACAATGTTGCCGCCG
GGAGTCAGGAACTTTCTTCCAGCAGCGAGGAGATGAGCCAGGGGGCCACGGAGCAGGCGGCGGCGGCTGAAGAGGCATCG
TCCAGCATGGAACAGATGAGCTCCAATATTCGCCAGAACGCCGACAATGCCCAGCAGACCGAAAAAATCGCCCTTAAGAG
TGCCACCGACGCCAAAGAAGGGGGCAAGGCGGTAGGCCAGACCGTCAATGCCATGAAGGAGATCGCCGGCAAGATATCCA
TCATTGAGGAGATTGCCCGTCAGACGAACCTGCTGGCCCTGAACGCGGCCATCGAGGCGGCCCGGGCCGGCGAGCACGGC
AAGGGGTTTGCGGTGGTTGCGGCCGAGGTGAGAAAGCTGGCCGAGCGGAGCCAGAAGGCGGCGGGCGAGATCAGCGAGCT
GTCGGCCACGAGCGTCGACGTGGCGGAAAAGGCGGGCGAGATGCTTGAGCGCCTGGTTCCCGACATCCAGCGGACGGCGG
AACTGGTGCAGGAGATCAGCGCGGCGTGCAAGGAGCAGGATACCGGCGCCGAACAGATCAACAAGGCGATCCAGCAGCTC
GACCAGGTAATCCAGCAGAATGCCAGTGCTTCCGAAGAGATGGCCTCCACTTCCGAGGAGCTTGCCTCCCAGGCCGAACA
GCTGCAGGCGACCATCGGCTTCTTCAAGGTGGATGGCAGCGTTTCGGGCAGGAGCGCAAGCGTCAGGAAGCCCCCTGCCC
ACAAGGTGGAGGTGAAGCATATTGCTTCACACAGCGCCAACGGCTACGTCGCCAGTGCGTCTACCAGGAAAGCGGGAAGC
GCAGGCGTCGATCTCGACCTCAGCTCCGAATCTGACAATCTGGACAAAGAATTTGAAAAGTTTTGA

Upstream 100 bases:

>100_bases
ACACGAAATCAAAGACGGGAAATCCCTGCGCCGGTTCGGGGGACTTTGTACCCCTCCCAGCAGATATCGGCGGTACTCTC
AGTATTAAGGAGGTAGAAAG

Downstream 100 bases:

>100_bases
TGTCTCCTTATCGTAATGTGTCATCGACGCCGTGGCCACTGTCGCGGCGTCGTTTTTTGTTGGGGGCCTTCGCCTGTCTT
TCTGGTTTTTGTCAGTTCGG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MKLMNNMKIGTKILGLVTLMLAFMMTIAAFGVVKMKGIGEEIAGIDKQDIPLTEAINEVGKIQMDEMVLFHRAVRLGTNN
QQAELKKVEEAFGNKAKEFDATLKKAEQVVQQALKETAGDAAVQKEFTEMAERLKVIEKEYNDFEKVTQELFSTLDAGKF
SAVTELEHRVEKEGSDLEQAIDTFLKNVEKFTNDSVATAEKDEQMAVKAMIGLSLVALVLGLGIGIFISRAITRPLKQGV
DVATRLAGGDLTIAIDVTSKDETGQLLEAMANMVEKLKIVVADVKSASDNVAAGSQELSSSSEEMSQGATEQAAAAEEAS
SSMEQMSSNIRQNADNAQQTEKIALKSATDAKEGGKAVGQTVNAMKEIAGKISIIEEIARQTNLLALNAAIEAARAGEHG
KGFAVVAAEVRKLAERSQKAAGEISELSATSVDVAEKAGEMLERLVPDIQRTAELVQEISAACKEQDTGAEQINKAIQQL
DQVIQQNASASEEMASTSEELASQAEQLQATIGFFKVDGSVSGRSASVRKPPAHKVEVKHIASHSANGYVASASTRKAGS
AGVDLDLSSESDNLDKEFEKF

Sequences:

>Translated_581_residues
MKLMNNMKIGTKILGLVTLMLAFMMTIAAFGVVKMKGIGEEIAGIDKQDIPLTEAINEVGKIQMDEMVLFHRAVRLGTNN
QQAELKKVEEAFGNKAKEFDATLKKAEQVVQQALKETAGDAAVQKEFTEMAERLKVIEKEYNDFEKVTQELFSTLDAGKF
SAVTELEHRVEKEGSDLEQAIDTFLKNVEKFTNDSVATAEKDEQMAVKAMIGLSLVALVLGLGIGIFISRAITRPLKQGV
DVATRLAGGDLTIAIDVTSKDETGQLLEAMANMVEKLKIVVADVKSASDNVAAGSQELSSSSEEMSQGATEQAAAAEEAS
SSMEQMSSNIRQNADNAQQTEKIALKSATDAKEGGKAVGQTVNAMKEIAGKISIIEEIARQTNLLALNAAIEAARAGEHG
KGFAVVAAEVRKLAERSQKAAGEISELSATSVDVAEKAGEMLERLVPDIQRTAELVQEISAACKEQDTGAEQINKAIQQL
DQVIQQNASASEEMASTSEELASQAEQLQATIGFFKVDGSVSGRSASVRKPPAHKVEVKHIASHSANGYVASASTRKAGS
AGVDLDLSSESDNLDKEFEKF
>Mature_581_residues
MKLMNNMKIGTKILGLVTLMLAFMMTIAAFGVVKMKGIGEEIAGIDKQDIPLTEAINEVGKIQMDEMVLFHRAVRLGTNN
QQAELKKVEEAFGNKAKEFDATLKKAEQVVQQALKETAGDAAVQKEFTEMAERLKVIEKEYNDFEKVTQELFSTLDAGKF
SAVTELEHRVEKEGSDLEQAIDTFLKNVEKFTNDSVATAEKDEQMAVKAMIGLSLVALVLGLGIGIFISRAITRPLKQGV
DVATRLAGGDLTIAIDVTSKDETGQLLEAMANMVEKLKIVVADVKSASDNVAAGSQELSSSSEEMSQGATEQAAAAEEAS
SSMEQMSSNIRQNADNAQQTEKIALKSATDAKEGGKAVGQTVNAMKEIAGKISIIEEIARQTNLLALNAAIEAARAGEHG
KGFAVVAAEVRKLAERSQKAAGEISELSATSVDVAEKAGEMLERLVPDIQRTAELVQEISAACKEQDTGAEQINKAIQQL
DQVIQQNASASEEMASTSEELASQAEQLQATIGFFKVDGSVSGRSASVRKPPAHKVEVKHIASHSANGYVASASTRKAGS
AGVDLDLSSESDNLDKEFEKF

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=395, Percent_Identity=34.4303797468354, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI1787690, Length=322, Percent_Identity=37.888198757764, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI1788195, Length=430, Percent_Identity=33.953488372093, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1788194, Length=347, Percent_Identity=35.4466858789625, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1789453, Length=309, Percent_Identity=33.3333333333333, Blast_Score=154, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 62161; Mature: 62161

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHHCC
>Mature Secondary Structure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HHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]