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The map label for this gene is ybeX [C]

Identifier: 78223571

GI number: 78223571

Start: 2676393

End: 2677247

Strand: Reverse

Name: ybeX [C]

Synonym: Gmet_2368

Alternate gene names: 78223571

Gene position: 2677247-2676393 (Counterclockwise)

Preceding gene: 78223572

Following gene: 78223570

Centisome position: 66.97

GC content: 59.65

Gene sequence:

>855_bases
TTGGACGAGGGCTCTGGCAGGAAAAGCGCCGGACTGATGGACATGTTTGGCAGGTTTCTGACCGGCAAGAAGCGGATCAC
CGAAGAGGAGATCCAGGATATCATCGATGCCAGCGAGGAAGAGGGGCTCATCAACCCGGAAGAGAACGAGATGATCCGCT
CCATTTTCGAGCTCCGCGACACGGTGGTCAGGGAGATCATGGTGCCGCGCACCGACATGGCCTGCGTCTCCGCCGATACC
TCGGTGGGAGAGGTGCTGAGGACCATCATAACCTGCGGCCACTCGCGGATTCCGGTCTACGACGGGACTGTCGACAACAT
CATCGGCCTCATTTACGCCAAGGACCTCCTCAAATATTGGGGGATGGGGGACTCCTCCATCAATATCAGGCGTATTATGC
GCACCCCCTACTTCATTCCCGAGTCCAAGAACCTGGAAGAGCTCCTCCAGGAGTTCAAACGCAAACGGGTCCATATCGCC
ATCGTCATCGACGAGTACGGGGGCACGTCGGGGCTCGTCACCATCGAAGACCTGCTGGAGCAGATCGTGGGAGATATCCA
GGACGAGTACGACCTTGAGGAGGATTGGATCGTGGAGGAGCCCGACGGCTCGGTCCTTGTGGATGCCAGACTCCCCATCG
AAGACCTTGAGGAGCGCTTCGGCATCGAAATCGAGCGGGAGAAGTTCGACACCGTGGCCGGGCTCATCTTCCACCTGACC
GGGCGGATCCCCAAGGTCGGCGAGGAGATCGAAAACGACGCTCTTCGGATGACTGTCCTTGAGGGTGGCGAACGGAATAT
CAGGAAGGTGCGGGTGGCCCGCAGGGCCGGCGCCTCCGAGGAGACCGAAGGGTAG

Upstream 100 bases:

>100_bases
GCCACCGGGACGGGAATCACCCTCCTGGTGTTGATGCTGTTCCGGTTCATGAAATAGGCGTTTTTATACGCCACTGTACG
ACAAAGGAGGAATACAGGCC

Downstream 100 bases:

>100_bases
TGGACTACCGCAGATTACGGATGCCCGATTTTGACGCCATTCCACGGCGTGACTACCTGATGGCGGTTCTCTCGGGGGTG
CTCCTTGCCCTCTCGTTCCC

Product: CBS:transporter-associated region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 284

Protein sequence:

>284_residues
MDEGSGRKSAGLMDMFGRFLTGKKRITEEEIQDIIDASEEEGLINPEENEMIRSIFELRDTVVREIMVPRTDMACVSADT
SVGEVLRTIITCGHSRIPVYDGTVDNIIGLIYAKDLLKYWGMGDSSINIRRIMRTPYFIPESKNLEELLQEFKRKRVHIA
IVIDEYGGTSGLVTIEDLLEQIVGDIQDEYDLEEDWIVEEPDGSVLVDARLPIEDLEERFGIEIEREKFDTVAGLIFHLT
GRIPKVGEEIENDALRMTVLEGGERNIRKVRVARRAGASEETEG

Sequences:

>Translated_284_residues
MDEGSGRKSAGLMDMFGRFLTGKKRITEEEIQDIIDASEEEGLINPEENEMIRSIFELRDTVVREIMVPRTDMACVSADT
SVGEVLRTIITCGHSRIPVYDGTVDNIIGLIYAKDLLKYWGMGDSSINIRRIMRTPYFIPESKNLEELLQEFKRKRVHIA
IVIDEYGGTSGLVTIEDLLEQIVGDIQDEYDLEEDWIVEEPDGSVLVDARLPIEDLEERFGIEIEREKFDTVAGLIFHLT
GRIPKVGEEIENDALRMTVLEGGERNIRKVRVARRAGASEETEG
>Mature_284_residues
MDEGSGRKSAGLMDMFGRFLTGKKRITEEEIQDIIDASEEEGLINPEENEMIRSIFELRDTVVREIMVPRTDMACVSADT
SVGEVLRTIITCGHSRIPVYDGTVDNIIGLIYAKDLLKYWGMGDSSINIRRIMRTPYFIPESKNLEELLQEFKRKRVHIA
IVIDEYGGTSGLVTIEDLLEQIVGDIQDEYDLEEDWIVEEPDGSVLVDARLPIEDLEERFGIEIEREKFDTVAGLIFHLT
GRIPKVGEEIENDALRMTVLEGGERNIRKVRVARRAGASEETEG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=214, Percent_Identity=36.4485981308411, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI94681046, Length=180, Percent_Identity=30, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI40068055, Length=162, Percent_Identity=30.8641975308642, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40068053, Length=162, Percent_Identity=30.8641975308642, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40068049, Length=163, Percent_Identity=32.5153374233129, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1786879, Length=245, Percent_Identity=37.9591836734694, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87082033, Length=263, Percent_Identity=29.6577946768061, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788119, Length=273, Percent_Identity=29.6703296703297, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI145693175, Length=254, Percent_Identity=26.3779527559055, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790664, Length=255, Percent_Identity=25.4901960784314, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 32181; Mature: 32181

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00338 SOMATOTROPIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEGSGRKSAGLMDMFGRFLTGKKRITEEEIQDIIDASEEEGLINPEENEMIRSIFELRD
CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
TVVREIMVPRTDMACVSADTSVGEVLRTIITCGHSRIPVYDGTVDNIIGLIYAKDLLKYW
HHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHH
GMGDSSINIRRIMRTPYFIPESKNLEELLQEFKRKRVHIAIVIDEYGGTSGLVTIEDLLE
CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCEEHHHHHH
QIVGDIQDEYDLEEDWIVEEPDGSVLVDARLPIEDLEERFGIEIEREKFDTVAGLIFHLT
HHHHHHHHHCCCCCCCEEECCCCCEEEECCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHH
GRIPKVGEEIENDALRMTVLEGGERNIRKVRVARRAGASEETEG
CCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDEGSGRKSAGLMDMFGRFLTGKKRITEEEIQDIIDASEEEGLINPEENEMIRSIFELRD
CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
TVVREIMVPRTDMACVSADTSVGEVLRTIITCGHSRIPVYDGTVDNIIGLIYAKDLLKYW
HHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHH
GMGDSSINIRRIMRTPYFIPESKNLEELLQEFKRKRVHIAIVIDEYGGTSGLVTIEDLLE
CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCEEHHHHHH
QIVGDIQDEYDLEEDWIVEEPDGSVLVDARLPIEDLEERFGIEIEREKFDTVAGLIFHLT
HHHHHHHHHCCCCCCCEEECCCCCEEEECCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHH
GRIPKVGEEIENDALRMTVLEGGERNIRKVRVARRAGASEETEG
CCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]