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The map label for this gene is rfaQ [H]

Identifier: 78223544

GI number: 78223544

Start: 2648447

End: 2649619

Strand: Reverse

Name: rfaQ [H]

Synonym: Gmet_2341

Alternate gene names: 78223544

Gene position: 2649619-2648447 (Counterclockwise)

Preceding gene: 78223545

Following gene: 78223543

Centisome position: 66.28

GC content: 59.68

Gene sequence:

>1173_bases
GTGAGTTCGCGTGGCAGAAGTGCGAGCGGATGTTCCACGGCCACACCCTCAAAGAGAAATGGCTCGGCGGGAGGTTGCGT
TATTACTAGCCGTTCGAATTTCCATAGATCGGCCGCGCCGTCATTCCTGATCGTCTCGCTCCGTTACATCGGTGACGTGC
TCCTTTCGACCCCTCTGGCCCTCTCGATCAAGGAGCGTTTCCCGGATGCCACGATTGATTACCTGGTTCTGAAAGGAACG
GAAGGGGTCCTGGCGAAGAATCCTCTCATACGGTCCGTCCATACCATTGATCCGCAGAAATCGGTCGTGCCGCTTCTCCT
TTCGCTCTGGAAGAAATACGATTACGCTATCGGCAGCAATGTTTCTGATCGTACCACGCTTTTCTGCGTTGCGGCCGGTC
GCCGGTCGTACGGTTTTTCCTATTTTCGCGGCAAGGAGTGGTGGAAAAAACTGCTGCTGTCCTCCTGTCGTCTCTATGAC
GACCGGATGCACATCGTTCCTCTCGTTCTGACCCGGCTGGAACCTCTTGCCATCCCTCCGCGTCCACGGGTTGTCGCGGG
TGGCGACGCGGAAGACGAGGCATATGCGGCACGGTTGTTCGGGGACGCTGGCTACGTAGTACTTCATCCGTACTCGCGCA
AGGAGTACAAATGCTGGACGGTTGACGGCTGGCGCCGGCTTGCCGGACTGATTCTGGATGCGGGGTTGAAACCGCTTTTC
ACGGTGTCGCCGAACGCCGACGATGCAAAGATGCTGGCGGACATTCTGGCCGTGGCGCCTGAGGGCACCGGCTCCATCGG
CGACGTGCTCTCCTTCCCGCGACTGGCCGCCGTGATCCGGCGGGGGAGGGGATACGTGGGGGTGGATACCGTCGTCACCC
ATATGGCCGCGGCACTGGATGTCCCCACGGTCGCCCTCTATGGCCCGACGCTGGTGCATCACTGGGGACCCTGGCCAAAC
GATTTTCCCGGCTCTGCGCCGTACGGTCCTCGCGGAACAATCCAGCGCCAGGGATCGATTGTCGTGATTCAGAAAGAATG
GGAGTGCGTCCCCTGTAACCGTGAGGAGTGCTCTCGAACTGACGGTGGACCCATTGCCTGCATGGACGCCATCACCCCTG
AAGAGGTGATGACCGAACTGGCTGGATTGCTGGAAACGGGAGGTCGACCATGA

Upstream 100 bases:

>100_bases
CCCGAACGTCCCTACGTGGCAGAGAATCGGGCCTACTTCCGGGAAAAGTGGCAGCTCACGCGGGGGCGGCGTCTCATTGA
GCGGTGGCGCCGCAAGCTGC

Downstream 100 bases:

>100_bases
GCAGTTTTGCGGGGAAAGCATGCTGATAGAAAACGGCCAGTACAACATCGGGGATATCTGTACCTCCCGCCAATGCCGAC
TGGGGAGGGGAGATCGCGTT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSSRGRSASGCSTATPSKRNGSAGGCVITSRSNFHRSAAPSFLIVSLRYIGDVLLSTPLALSIKERFPDATIDYLVLKGT
EGVLAKNPLIRSVHTIDPQKSVVPLLLSLWKKYDYAIGSNVSDRTTLFCVAAGRRSYGFSYFRGKEWWKKLLLSSCRLYD
DRMHIVPLVLTRLEPLAIPPRPRVVAGGDAEDEAYAARLFGDAGYVVLHPYSRKEYKCWTVDGWRRLAGLILDAGLKPLF
TVSPNADDAKMLADILAVAPEGTGSIGDVLSFPRLAAVIRRGRGYVGVDTVVTHMAAALDVPTVALYGPTLVHHWGPWPN
DFPGSAPYGPRGTIQRQGSIVVIQKEWECVPCNREECSRTDGGPIACMDAITPEEVMTELAGLLETGGRP

Sequences:

>Translated_390_residues
MSSRGRSASGCSTATPSKRNGSAGGCVITSRSNFHRSAAPSFLIVSLRYIGDVLLSTPLALSIKERFPDATIDYLVLKGT
EGVLAKNPLIRSVHTIDPQKSVVPLLLSLWKKYDYAIGSNVSDRTTLFCVAAGRRSYGFSYFRGKEWWKKLLLSSCRLYD
DRMHIVPLVLTRLEPLAIPPRPRVVAGGDAEDEAYAARLFGDAGYVVLHPYSRKEYKCWTVDGWRRLAGLILDAGLKPLF
TVSPNADDAKMLADILAVAPEGTGSIGDVLSFPRLAAVIRRGRGYVGVDTVVTHMAAALDVPTVALYGPTLVHHWGPWPN
DFPGSAPYGPRGTIQRQGSIVVIQKEWECVPCNREECSRTDGGPIACMDAITPEEVMTELAGLLETGGRP
>Mature_389_residues
SSRGRSASGCSTATPSKRNGSAGGCVITSRSNFHRSAAPSFLIVSLRYIGDVLLSTPLALSIKERFPDATIDYLVLKGTE
GVLAKNPLIRSVHTIDPQKSVVPLLLSLWKKYDYAIGSNVSDRTTLFCVAAGRRSYGFSYFRGKEWWKKLLLSSCRLYDD
RMHIVPLVLTRLEPLAIPPRPRVVAGGDAEDEAYAARLFGDAGYVVLHPYSRKEYKCWTVDGWRRLAGLILDAGLKPLFT
VSPNADDAKMLADILAVAPEGTGSIGDVLSFPRLAAVIRRGRGYVGVDTVVTHMAAALDVPTVALYGPTLVHHWGPWPND
FPGSAPYGPRGTIQRQGSIVVIQKEWECVPCNREECSRTDGGPIACMDAITPEEVMTELAGLLETGGRP

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=295, Percent_Identity=29.8305084745763, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42403; Mature: 42272

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRGRSASGCSTATPSKRNGSAGGCVITSRSNFHRSAAPSFLIVSLRYIGDVLLSTPLA
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHEEHHHHHHHHHHHHCCCE
LSIKERFPDATIDYLVLKGTEGVLAKNPLIRSVHTIDPQKSVVPLLLSLWKKYDYAIGSN
EEHHHHCCCCCEEEEEEECCCCCHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
VSDRTTLFCVAAGRRSYGFSYFRGKEWWKKLLLSSCRLYDDRMHIVPLVLTRLEPLAIPP
CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
RPRVVAGGDAEDEAYAARLFGDAGYVVLHPYSRKEYKCWTVDGWRRLAGLILDAGLKPLF
CCCEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCCCEE
TVSPNADDAKMLADILAVAPEGTGSIGDVLSFPRLAAVIRRGRGYVGVDTVVTHMAAALD
EECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
VPTVALYGPTLVHHWGPWPNDFPGSAPYGPRGTIQRQGSIVVIQKEWECVPCNREECSRT
CCEEEEECCHHEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCHHHHCCC
DGGPIACMDAITPEEVMTELAGLLETGGRP
CCCCEEEECCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSRGRSASGCSTATPSKRNGSAGGCVITSRSNFHRSAAPSFLIVSLRYIGDVLLSTPLA
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHEEHHHHHHHHHHHHCCCE
LSIKERFPDATIDYLVLKGTEGVLAKNPLIRSVHTIDPQKSVVPLLLSLWKKYDYAIGSN
EEHHHHCCCCCEEEEEEECCCCCHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
VSDRTTLFCVAAGRRSYGFSYFRGKEWWKKLLLSSCRLYDDRMHIVPLVLTRLEPLAIPP
CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
RPRVVAGGDAEDEAYAARLFGDAGYVVLHPYSRKEYKCWTVDGWRRLAGLILDAGLKPLF
CCCEEECCCCCCHHHHHHHCCCCCEEEECCCCCCCEEEEECHHHHHHHHHHHHCCCCCEE
TVSPNADDAKMLADILAVAPEGTGSIGDVLSFPRLAAVIRRGRGYVGVDTVVTHMAAALD
EECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
VPTVALYGPTLVHHWGPWPNDFPGSAPYGPRGTIQRQGSIVVIQKEWECVPCNREECSRT
CCEEEEECCHHEECCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCHHHHCCC
DGGPIACMDAITPEEVMTELAGLLETGGRP
CCCCEEEECCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]