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The map label for this gene is yhcC [C]

Identifier: 78223519

GI number: 78223519

Start: 2624653

End: 2625693

Strand: Reverse

Name: yhcC [C]

Synonym: Gmet_2316

Alternate gene names: 78223519

Gene position: 2625693-2624653 (Counterclockwise)

Preceding gene: 78223520

Following gene: 78223518

Centisome position: 65.68

GC content: 66.57

Gene sequence:

>1041_bases
ATGAAGCCGCTCATTGTCCCCTTTTTTATCTCCCACCAGGGATGTCCCCATCAGTGTGTCTTCTGCGACCAGGAGCGGAT
TTCCGGCCAGCGGCCCGGGCTTCCTGAGCCGGAGGAGATGATCGCCACCATCGACCGCCATGCCGCGTCCGGACGGGGGA
GGCCTCTGGAAGTGGCCTTCTATGGCGGCACCTTCACGAGCCTCCCTCGGAGCGACCAGGAACGGCTCCTGGCGCCGCTG
CAGCCCCTCATGGCAACGGGGAGCGTGGCCCGGGTGAGGCTTTCCACCCGGCCCGATGCGGTTGACGGTGAAACGGCGCG
CTTTCTCGCGAGCCGTGGCGTGGCCACCGTGGAGTTGGGGGTCCAGTCCATGGATGATGCTGTTCTCACCGCGGCCGGCA
GGGGGCATGGGGCGGCCCATGTGGAGCAGGCGTTCGCGTCCCTTTGCGGGGCCGGCATCGACGTCGGCGCCCAACTGATG
CCGGGGCTTCCCGGCGATACCGCAGATTCGACCCTTGAATCCCTCGAACGGGTCCTTGCCCTGTCTCCGGCCTTTATGCG
CATCTATCCCACGTTGGTTGTGGAGGGGACCCGGTTGGCGGAACTCTGGCGCTCCGGGGACTACACCCCCCTGGCCCTCG
ACGATGCCGTCTCCCTCTGCGCGGCCATGCTCCGCCGGTGTATCTCTGCCGGCGTGCCGGTGATCCGGATTGGTCTCCAG
CCCACGGAGGAACTGGAGCGGCCCGGGACGGTCCTGGCTGGTCCGTGGCATCCGGCATTTCGGCAGCTTGCGGAAAGCGA
ACTCTTTTTCGATCTTCTCCAGCGACTGACAGCGGGGATTCCCGCCGGTTCCGATCTGGTGGTTGTCTGCGCGCCCCGGC
GGTTGTCCGACGTGGCGGGGCAGCACCGCCGTAATCTCGTCCGTCTCAGGGAGCGGTCCGGCGTGGCGGTGACGCGGGTC
ACCGGCAGTTCGCACCTCTCCCCCTACGATCTCGAAGTTGTTTATGCCGGCGGAACCATTGCCGGCAACGTGCTGGATTG
A

Upstream 100 bases:

>100_bases
CCGGAAAACGGATGGGGGAGGGGGCTGGGAGGAGCAAGAAGGAGGCGGAGCAGGCGGCTGCCCGGCAGGTGCTCGCGCGG
TTCGCTGCCGAAGGAGAAGG

Downstream 100 bases:

>100_bases
CCTGCACGTTTCACGAAAGGAGTTGCACTTTGTCAGATAACCCGTTCCGATCCGGATTCGTGTCCATCATCGGGCGCCCC
AACGTAGGGAAATCGACTCT

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MKPLIVPFFISHQGCPHQCVFCDQERISGQRPGLPEPEEMIATIDRHAASGRGRPLEVAFYGGTFTSLPRSDQERLLAPL
QPLMATGSVARVRLSTRPDAVDGETARFLASRGVATVELGVQSMDDAVLTAAGRGHGAAHVEQAFASLCGAGIDVGAQLM
PGLPGDTADSTLESLERVLALSPAFMRIYPTLVVEGTRLAELWRSGDYTPLALDDAVSLCAAMLRRCISAGVPVIRIGLQ
PTEELERPGTVLAGPWHPAFRQLAESELFFDLLQRLTAGIPAGSDLVVVCAPRRLSDVAGQHRRNLVRLRERSGVAVTRV
TGSSHLSPYDLEVVYAGGTIAGNVLD

Sequences:

>Translated_346_residues
MKPLIVPFFISHQGCPHQCVFCDQERISGQRPGLPEPEEMIATIDRHAASGRGRPLEVAFYGGTFTSLPRSDQERLLAPL
QPLMATGSVARVRLSTRPDAVDGETARFLASRGVATVELGVQSMDDAVLTAAGRGHGAAHVEQAFASLCGAGIDVGAQLM
PGLPGDTADSTLESLERVLALSPAFMRIYPTLVVEGTRLAELWRSGDYTPLALDDAVSLCAAMLRRCISAGVPVIRIGLQ
PTEELERPGTVLAGPWHPAFRQLAESELFFDLLQRLTAGIPAGSDLVVVCAPRRLSDVAGQHRRNLVRLRERSGVAVTRV
TGSSHLSPYDLEVVYAGGTIAGNVLD
>Mature_346_residues
MKPLIVPFFISHQGCPHQCVFCDQERISGQRPGLPEPEEMIATIDRHAASGRGRPLEVAFYGGTFTSLPRSDQERLLAPL
QPLMATGSVARVRLSTRPDAVDGETARFLASRGVATVELGVQSMDDAVLTAAGRGHGAAHVEQAFASLCGAGIDVGAQLM
PGLPGDTADSTLESLERVLALSPAFMRIYPTLVVEGTRLAELWRSGDYTPLALDDAVSLCAAMLRRCISAGVPVIRIGLQ
PTEELERPGTVLAGPWHPAFRQLAESELFFDLLQRLTAGIPAGSDLVVVCAPRRLSDVAGQHRRNLVRLRERSGVAVTRV
TGSSHLSPYDLEVVYAGGTIAGNVLD

Specific function: Unknown

COG id: COG1243

COG function: function code KB; Histone acetyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yhcC [H]

Homologues:

Organism=Homo sapiens, GI23510283, Length=190, Percent_Identity=28.4210526315789, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI2367204, Length=211, Percent_Identity=24.6445497630332, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI133955098, Length=257, Percent_Identity=28.0155642023346, Blast_Score=74, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6325171, Length=257, Percent_Identity=28.7937743190661, Blast_Score=89, Evalue=9e-19,
Organism=Drosophila melanogaster, GI19920684, Length=274, Percent_Identity=27.3722627737226, Blast_Score=78, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005911
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 36962; Mature: 36962

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLIVPFFISHQGCPHQCVFCDQERISGQRPGLPEPEEMIATIDRHAASGRGRPLEVAF
CCCEEEEEEECCCCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
YGGTFTSLPRSDQERLLAPLQPLMATGSVARVRLSTRPDAVDGETARFLASRGVATVELG
ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEC
VQSMDDAVLTAAGRGHGAAHVEQAFASLCGAGIDVGAQLMPGLPGDTADSTLESLERVLA
HHHHCCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
LSPAFMRIYPTLVVEGTRLAELWRSGDYTPLALDDAVSLCAAMLRRCISAGVPVIRIGLQ
CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCC
PTEELERPGTVLAGPWHPAFRQLAESELFFDLLQRLTAGIPAGSDLVVVCAPRRLSDVAG
CHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH
QHRRNLVRLRERSGVAVTRVTGSSHLSPYDLEVVYAGGTIAGNVLD
HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCEEECCCCC
>Mature Secondary Structure
MKPLIVPFFISHQGCPHQCVFCDQERISGQRPGLPEPEEMIATIDRHAASGRGRPLEVAF
CCCEEEEEEECCCCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
YGGTFTSLPRSDQERLLAPLQPLMATGSVARVRLSTRPDAVDGETARFLASRGVATVELG
ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEC
VQSMDDAVLTAAGRGHGAAHVEQAFASLCGAGIDVGAQLMPGLPGDTADSTLESLERVLA
HHHHCCHHEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH
LSPAFMRIYPTLVVEGTRLAELWRSGDYTPLALDDAVSLCAAMLRRCISAGVPVIRIGLQ
CCHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEECCC
PTEELERPGTVLAGPWHPAFRQLAESELFFDLLQRLTAGIPAGSDLVVVCAPRRLSDVAG
CHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHH
QHRRNLVRLRERSGVAVTRVTGSSHLSPYDLEVVYAGGTIAGNVLD
HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEECCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]