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The map label for this gene is yqiR [H]

Identifier: 78223262

GI number: 78223262

Start: 2308428

End: 2310230

Strand: Reverse

Name: yqiR [H]

Synonym: Gmet_2055

Alternate gene names: 78223262

Gene position: 2310230-2308428 (Counterclockwise)

Preceding gene: 78223263

Following gene: 78223261

Centisome position: 57.79

GC content: 56.18

Gene sequence:

>1803_bases
ATGAAATGTGCCGATGATAATGCAATGGTCGGGTTGAATGAGAACCCGTCAGCAGAGCCGAGCAGTGCGGGAATTCTCTG
CATAGACACTGATTTCGCGATTGTTTCTCTTGACGAGACCACTGGAAAACTGCTGGGGGAGACTCCGGAAGCCCTGCTGG
GGAAGAGAATCGACGCTGTGGTCGATCTGGCGAATCTCGGCAACCTCATGCGAAGTGGCAACAGTTTTAGCAGCCAGGTC
ATAAAGTCGAAGACCGGCTCCATAGTCTGCGACTACGTACCGATCATTGACAACGACCGGATCGTGGGAGGCACGCTTTC
GCTCATCAGGATGCTCCCCGACGGCTTTCCCGACTCCTCTGACGAGTTGGGAGAAATTCTTCGCTCCGCCAATTCCTTCC
TTAATTTTGACCATGACGGCATCATCGTTGTCGACCGCAAAGGGATCGTGGTCCTGGTTAACCAGTCCTTCGCCAGGCTA
TTCGAGACAACACCCCAGGCCATGATCGGTAAGCACATCCGCCAGGCCTACACCACTACTTCCCAGCCTTCACGCATGCC
GACGGTTATGGAAACCGGCAAGCCCGAGATCGGCGTTGCCCATTACCTGAACGGCAAACAGGTCTACGCCAGCATCTTTC
CCCTTATCAAGGATGGGAGGATCATCGGCTGCGTGGGGAAGATCCTCTTCAGCGACATACGGGAGATCACTCTCATCGCC
AACCGGCTCCAGGCCGCGGAACCGCGGAAACAGCACCGACACAGTGCGGGTTGCGAAATCCACTTCAAGTACGACATCAA
CAGTATCGTCGGCCAGAGCAAAAAGATTGTGGAGCTGAAGGAAACCCTGCTGCGGGTCGCCCTCAAGATGTCCAACATTC
TCCTGCGCGGGGAGAGCGGCACCGGCAAGGAGCTGTTCGCCCATGCCATTCACTCCGCCAGCAACCGGCGGTATGCGCCA
TTCGTCAGCATGAACTGCGCGGCCATTCCCGAGCATCTTCTGGAGTCGGAGCTCTTCGGTTATGTGGAGGGGGCTTTTAC
CGGCGCCAAGAAGGGGGGGCAGCTTGGAAGGTTCGAGCAGGCCCATACCGGCACCATCTTTCTGGACGAGATCGGTGACA
TGCCGCTCTACATGCAGGCCAAGATGCTGCGGCTGTTGCAGGAAAGGGAACTGACGCCGCTGGGGAGCACCATCCCTCGG
AGCGTTGATGTCCGGGTGGTGGCGGCGACCAACAGCAATCTGGAGCAGCAGGTCAAGGAAGGAAAGTTCCGGGAAGATCT
CTACTACCGGCTCAATGTGGTGACCTTCGCCATCCCTCCGCTTCGGGAGCGGATGGAGGATATTCCGCTGCTCATCAGCA
GCTTCGTCAGCAAGTTCAACTCCGAATTCGGACTTGACGTGCAGGGGCTCGATGAAGAGGTATTGAATATCATTAACCGC
TACGATTGGCCCGGGAATATCCGCGAGCTCCGCAATGTGATCGAAAGCGCCTTCAACGTGGTTGTCGGGCCGCTGATCAA
GAGAGAGCATTTACCCGATCAGCTTTGTCTCCTGTTCCCCAGTGAAGGAGAGGGGGGGGGGCAAGCTACTGAACCGGGAG
CAGAGGAATTTATTCGTGCCAGCCTCGGTAAAAAGGATATCGGCCGGATTATGGATGATTTCGAAAAGCTGCTCATCCAT
GAGGCAATCGAGGTTAGCCACGGCAATAAGGTCCATGCTGCCCACCTGTTGGGGATCTCCCGGCAGGGACTCTATAAAAA
ACTACATAAGCATGCCGATGAGGATGACCCCATCCAGTGCTGA

Upstream 100 bases:

>100_bases
ATGTATGAAGCTAAGACCGGGTGACCACTGGCGTGACGAATTGTTAGTGGTTTTTAAACATGCATTTTTGTAGTGAGGAT
ACGTAGAGAGAGAAGGCTTT

Downstream 100 bases:

>100_bases
ATGCCTCCGCTTACGAATCACAATCATGCGGCCAATCGCCGGCTCGCCTGATCTCCCGCCTGTTTTATTTATTCACCTCT
TCCCCCGTACTGCACATTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 600; Mature: 600

Protein sequence:

>600_residues
MKCADDNAMVGLNENPSAEPSSAGILCIDTDFAIVSLDETTGKLLGETPEALLGKRIDAVVDLANLGNLMRSGNSFSSQV
IKSKTGSIVCDYVPIIDNDRIVGGTLSLIRMLPDGFPDSSDELGEILRSANSFLNFDHDGIIVVDRKGIVVLVNQSFARL
FETTPQAMIGKHIRQAYTTTSQPSRMPTVMETGKPEIGVAHYLNGKQVYASIFPLIKDGRIIGCVGKILFSDIREITLIA
NRLQAAEPRKQHRHSAGCEIHFKYDINSIVGQSKKIVELKETLLRVALKMSNILLRGESGTGKELFAHAIHSASNRRYAP
FVSMNCAAIPEHLLESELFGYVEGAFTGAKKGGQLGRFEQAHTGTIFLDEIGDMPLYMQAKMLRLLQERELTPLGSTIPR
SVDVRVVAATNSNLEQQVKEGKFREDLYYRLNVVTFAIPPLRERMEDIPLLISSFVSKFNSEFGLDVQGLDEEVLNIINR
YDWPGNIRELRNVIESAFNVVVGPLIKREHLPDQLCLLFPSEGEGGGQATEPGAEEFIRASLGKKDIGRIMDDFEKLLIH
EAIEVSHGNKVHAAHLLGISRQGLYKKLHKHADEDDPIQC

Sequences:

>Translated_600_residues
MKCADDNAMVGLNENPSAEPSSAGILCIDTDFAIVSLDETTGKLLGETPEALLGKRIDAVVDLANLGNLMRSGNSFSSQV
IKSKTGSIVCDYVPIIDNDRIVGGTLSLIRMLPDGFPDSSDELGEILRSANSFLNFDHDGIIVVDRKGIVVLVNQSFARL
FETTPQAMIGKHIRQAYTTTSQPSRMPTVMETGKPEIGVAHYLNGKQVYASIFPLIKDGRIIGCVGKILFSDIREITLIA
NRLQAAEPRKQHRHSAGCEIHFKYDINSIVGQSKKIVELKETLLRVALKMSNILLRGESGTGKELFAHAIHSASNRRYAP
FVSMNCAAIPEHLLESELFGYVEGAFTGAKKGGQLGRFEQAHTGTIFLDEIGDMPLYMQAKMLRLLQERELTPLGSTIPR
SVDVRVVAATNSNLEQQVKEGKFREDLYYRLNVVTFAIPPLRERMEDIPLLISSFVSKFNSEFGLDVQGLDEEVLNIINR
YDWPGNIRELRNVIESAFNVVVGPLIKREHLPDQLCLLFPSEGEGGGQATEPGAEEFIRASLGKKDIGRIMDDFEKLLIH
EAIEVSHGNKVHAAHLLGISRQGLYKKLHKHADEDDPIQC
>Mature_600_residues
MKCADDNAMVGLNENPSAEPSSAGILCIDTDFAIVSLDETTGKLLGETPEALLGKRIDAVVDLANLGNLMRSGNSFSSQV
IKSKTGSIVCDYVPIIDNDRIVGGTLSLIRMLPDGFPDSSDELGEILRSANSFLNFDHDGIIVVDRKGIVVLVNQSFARL
FETTPQAMIGKHIRQAYTTTSQPSRMPTVMETGKPEIGVAHYLNGKQVYASIFPLIKDGRIIGCVGKILFSDIREITLIA
NRLQAAEPRKQHRHSAGCEIHFKYDINSIVGQSKKIVELKETLLRVALKMSNILLRGESGTGKELFAHAIHSASNRRYAP
FVSMNCAAIPEHLLESELFGYVEGAFTGAKKGGQLGRFEQAHTGTIFLDEIGDMPLYMQAKMLRLLQERELTPLGSTIPR
SVDVRVVAATNSNLEQQVKEGKFREDLYYRLNVVTFAIPPLRERMEDIPLLISSFVSKFNSEFGLDVQGLDEEVLNIINR
YDWPGNIRELRNVIESAFNVVVGPLIKREHLPDQLCLLFPSEGEGGGQATEPGAEEFIRASLGKKDIGRIMDDFEKLLIH
EAIEVSHGNKVHAAHLLGISRQGLYKKLHKHADEDDPIQC

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=495, Percent_Identity=37.3737373737374, Blast_Score=288, Evalue=6e-79,
Organism=Escherichia coli, GI1788550, Length=363, Percent_Identity=44.3526170798898, Blast_Score=288, Evalue=9e-79,
Organism=Escherichia coli, GI1790437, Length=322, Percent_Identity=43.7888198757764, Blast_Score=250, Evalue=2e-67,
Organism=Escherichia coli, GI1790299, Length=330, Percent_Identity=40.9090909090909, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1786524, Length=340, Percent_Identity=40.8823529411765, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1788905, Length=324, Percent_Identity=40.7407407407407, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI87082117, Length=257, Percent_Identity=48.2490272373541, Blast_Score=232, Evalue=4e-62,
Organism=Escherichia coli, GI1789087, Length=249, Percent_Identity=47.3895582329317, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI87082152, Length=320, Percent_Identity=38.125, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI1787583, Length=250, Percent_Identity=42, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI87081872, Length=337, Percent_Identity=36.2017804154303, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI87081858, Length=472, Percent_Identity=26.9067796610169, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1789828, Length=315, Percent_Identity=32.6984126984127, Blast_Score=132, Evalue=5e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 66272; Mature: 66272

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCADDNAMVGLNENPSAEPSSAGILCIDTDFAIVSLDETTGKLLGETPEALLGKRIDAV
CCCCCCCCEEECCCCCCCCCCCCCEEEEECCEEEEEECCHHHHHHCCCHHHHHHHHHHHH
VDLANLGNLMRSGNSFSSQVIKSKTGSIVCDYVPIIDNDRIVGGTLSLIRMLPDGFPDSS
HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECEECCCEEEHHHHHHHHHCCCCCCCCH
DELGEILRSANSFLNFDHDGIIVVDRKGIVVLVNQSFARLFETTPQAMIGKHIRQAYTTT
HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHCCC
SQPSRMPTVMETGKPEIGVAHYLNGKQVYASIFPLIKDGRIIGCVGKILFSDIREITLIA
CCCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NRLQAAEPRKQHRHSAGCEIHFKYDINSIVGQSKKIVELKETLLRVALKMSNILLRGESG
HHHHHCCCHHHHCCCCCCEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCC
TGKELFAHAIHSASNRRYAPFVSMNCAAIPEHLLESELFGYVEGAFTGAKKGGQLGRFEQ
CCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AHTGTIFLDEIGDMPLYMQAKMLRLLQERELTPLGSTIPRSVDVRVVAATNSNLEQQVKE
CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHC
GKFREDLYYRLNVVTFAIPPLRERMEDIPLLISSFVSKFNSEFGLDVQGLDEEVLNIINR
CCHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
YDWPGNIRELRNVIESAFNVVVGPLIKREHLPDQLCLLFPSEGEGGGQATEPGAEEFIRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
SLGKKDIGRIMDDFEKLLIHEAIEVSHGNKVHAAHLLGISRQGLYKKLHKHADEDDPIQC
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKCADDNAMVGLNENPSAEPSSAGILCIDTDFAIVSLDETTGKLLGETPEALLGKRIDAV
CCCCCCCCEEECCCCCCCCCCCCCEEEEECCEEEEEECCHHHHHHCCCHHHHHHHHHHHH
VDLANLGNLMRSGNSFSSQVIKSKTGSIVCDYVPIIDNDRIVGGTLSLIRMLPDGFPDSS
HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECEECCCEEEHHHHHHHHHCCCCCCCCH
DELGEILRSANSFLNFDHDGIIVVDRKGIVVLVNQSFARLFETTPQAMIGKHIRQAYTTT
HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEECHHHHHHHHCCHHHHHHHHHHHHHCCC
SQPSRMPTVMETGKPEIGVAHYLNGKQVYASIFPLIKDGRIIGCVGKILFSDIREITLIA
CCCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NRLQAAEPRKQHRHSAGCEIHFKYDINSIVGQSKKIVELKETLLRVALKMSNILLRGESG
HHHHHCCCHHHHCCCCCCEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHEEEECCCC
TGKELFAHAIHSASNRRYAPFVSMNCAAIPEHLLESELFGYVEGAFTGAKKGGQLGRFEQ
CCHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
AHTGTIFLDEIGDMPLYMQAKMLRLLQERELTPLGSTIPRSVDVRVVAATNSNLEQQVKE
CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHC
GKFREDLYYRLNVVTFAIPPLRERMEDIPLLISSFVSKFNSEFGLDVQGLDEEVLNIINR
CCHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
YDWPGNIRELRNVIESAFNVVVGPLIKREHLPDQLCLLFPSEGEGGGQATEPGAEEFIRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
SLGKKDIGRIMDDFEKLLIHEAIEVSHGNKVHAAHLLGISRQGLYKKLHKHADEDDPIQC
HCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]