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The map label for this gene is yibD [C]

Identifier: 78223221

GI number: 78223221

Start: 2254010

End: 2254921

Strand: Reverse

Name: yibD [C]

Synonym: Gmet_2014

Alternate gene names: 78223221

Gene position: 2254921-2254010 (Counterclockwise)

Preceding gene: 78223222

Following gene: 78223220

Centisome position: 56.41

GC content: 46.71

Gene sequence:

>912_bases
ATGAACAAGGTCAGTGTTGTATTGCCAACGTATAATTGTGGCACGTATGTCGGTGTGGCTGTCGAATCTGTTTTGCAACA
GACATACAGCAACTATGAGCTGATCATAGTAAATGACGGTTCAACCGATGAAACAGATCAGGCGCTGGCACCATACTTAT
GCAATAATGGTCATATCCGTTACATCAAGCAGGGAAACAAGGGGCATGCTGGTGCCAGAAATACGGGAATAAGGGCAGCC
ACAGGGGATGTTATCGCATTCATCGATTCCGATGACAAATGGTTGCCCGAGAAGCTGGGAGAACAGGTGCAAGCAATGGA
AGAGGACCCTGAAGTAGGCCTGGTTCATTGCAACGTTTACGGTTTTGGCGAAAACCAGGAAGTGCAAGTGAGGGGGCCAC
TGTTGACTCAAGAGCAGCTTCAGGGGTATTCCGGCTATATTTTCGATAACCTGTATTTTAGAAAAATAATCATAACGACA
ACTACGGTTATGATCAGAAAGAGTTGCATCGATGATGTAGGTATGTTCGACGAGAACATGACGCGGTACGGATCGGAAGA
CAGAGAGTTGTTCCTGCGTATTCTGTGGAAATACAAAGCCAGATACGTAAACAAGCCTTTGGCCATGTACCGCAACAGGA
GCGATTCAGAAGGCCAGAACTATGAAAGGATGATTAAGGGACAAGAGTATGTATATGAGAAGATAACCAGCCTGTATGGA
TTGCCCCAAAGCTCAAAAAGAGCTGTTATGTCGAAGATGTATCAGGAGTGGGCACGTGAATTCTATGCCAAGGGACGCTT
TGCTGACGGACTCACCAATCAGGTCAAGGCAATCAGGGCGAATCCGATCGACATGAATGCCTATTTCGCTTTGAAGCGCT
ACGCCAGGTTTCTTTTCAGCAGGGCCACGTAG

Upstream 100 bases:

>100_bases
TGTTTTTGAGGCCGGCGTACCTTTTTTAGAGCGTAACAAAATTGTTTTCAGCAAAAGAAAGTACAGATAAGATTGAACAC
CATCGCTGTAAAGGATCAGT

Downstream 100 bases:

>100_bases
AGTTCGTGGATTCCCCTTCTTGAGCGTGATGATCCGGATGATTTGGCAGACATTGCGCGTTGGCGCGCTCTTTTCTATGA
CAACAACCGATAAAATACTG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNKVSVVLPTYNCGTYVGVAVESVLQQTYSNYELIIVNDGSTDETDQALAPYLCNNGHIRYIKQGNKGHAGARNTGIRAA
TGDVIAFIDSDDKWLPEKLGEQVQAMEEDPEVGLVHCNVYGFGENQEVQVRGPLLTQEQLQGYSGYIFDNLYFRKIIITT
TTVMIRKSCIDDVGMFDENMTRYGSEDRELFLRILWKYKARYVNKPLAMYRNRSDSEGQNYERMIKGQEYVYEKITSLYG
LPQSSKRAVMSKMYQEWAREFYAKGRFADGLTNQVKAIRANPIDMNAYFALKRYARFLFSRAT

Sequences:

>Translated_303_residues
MNKVSVVLPTYNCGTYVGVAVESVLQQTYSNYELIIVNDGSTDETDQALAPYLCNNGHIRYIKQGNKGHAGARNTGIRAA
TGDVIAFIDSDDKWLPEKLGEQVQAMEEDPEVGLVHCNVYGFGENQEVQVRGPLLTQEQLQGYSGYIFDNLYFRKIIITT
TTVMIRKSCIDDVGMFDENMTRYGSEDRELFLRILWKYKARYVNKPLAMYRNRSDSEGQNYERMIKGQEYVYEKITSLYG
LPQSSKRAVMSKMYQEWAREFYAKGRFADGLTNQVKAIRANPIDMNAYFALKRYARFLFSRAT
>Mature_303_residues
MNKVSVVLPTYNCGTYVGVAVESVLQQTYSNYELIIVNDGSTDETDQALAPYLCNNGHIRYIKQGNKGHAGARNTGIRAA
TGDVIAFIDSDDKWLPEKLGEQVQAMEEDPEVGLVHCNVYGFGENQEVQVRGPLLTQEQLQGYSGYIFDNLYFRKIIITT
TTVMIRKSCIDDVGMFDENMTRYGSEDRELFLRILWKYKARYVNKPLAMYRNRSDSEGQNYERMIKGQEYVYEKITSLYG
LPQSSKRAVMSKMYQEWAREFYAKGRFADGLTNQVKAIRANPIDMNAYFALKRYARFLFSRAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=133, Percent_Identity=37.593984962406, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788372, Length=199, Percent_Identity=30.6532663316583, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787259, Length=184, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 34753; Mature: 34753

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVSVVLPTYNCGTYVGVAVESVLQQTYSNYELIIVNDGSTDETDQALAPYLCNNGHIR
CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCEE
YIKQGNKGHAGARNTGIRAATGDVIAFIDSDDKWLPEKLGEQVQAMEEDPEVGLVHCNVY
EEEECCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
GFGENQEVQVRGPLLTQEQLQGYSGYIFDNLYFRKIIITTTTVMIRKSCIDDVGMFDENM
ECCCCCEEEEECCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
TRYGSEDRELFLRILWKYKARYVNKPLAMYRNRSDSEGQNYERMIKGQEYVYEKITSLYG
HHCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHC
LPQSSKRAVMSKMYQEWAREFYAKGRFADGLTNQVKAIRANPIDMNAYFALKRYARFLFS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RAT
CCC
>Mature Secondary Structure
MNKVSVVLPTYNCGTYVGVAVESVLQQTYSNYELIIVNDGSTDETDQALAPYLCNNGHIR
CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCEE
YIKQGNKGHAGARNTGIRAATGDVIAFIDSDDKWLPEKLGEQVQAMEEDPEVGLVHCNVY
EEEECCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEE
GFGENQEVQVRGPLLTQEQLQGYSGYIFDNLYFRKIIITTTTVMIRKSCIDDVGMFDENM
ECCCCCEEEEECCCCCHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
TRYGSEDRELFLRILWKYKARYVNKPLAMYRNRSDSEGQNYERMIKGQEYVYEKITSLYG
HHCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHC
LPQSSKRAVMSKMYQEWAREFYAKGRFADGLTNQVKAIRANPIDMNAYFALKRYARFLFS
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RAT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA