Click here to switch to the map view.

The map label for this gene is yadE [C]

Identifier: 78223220

GI number: 78223220

Start: 2252830

End: 2253990

Strand: Reverse

Name: yadE [C]

Synonym: Gmet_2013

Alternate gene names: 78223220

Gene position: 2253990-2252830 (Counterclockwise)

Preceding gene: 78223221

Following gene: 78223219

Centisome position: 56.39

GC content: 49.35

Gene sequence:

>1161_bases
TTGAGCGTGATGATCCGGATGATTTGGCAGACATTGCGCGTTGGCGCGCTCTTTTCTATGACAACAACCGATAAAATACT
GATTGCCGAGAAAGGCAGACCCGAATCAACAGTGATGAAAATCAAGAAAACAGTAAAACGCGGCATCTATTTGATCCTCT
ATCATCTCCATCTGTTCGACGCGGCATTGGTGGTGGTGTCATGGCTGCGAAAAGAGCACCCTTGCATTATTCTCCTCTAT
CATCGCATTGTTGATGATCAAACCGTTTACCTGGATAAGGGGCCGGTGGTTCATCACCATATTAGGGATTTCGAGCGAGA
GATAGCGTGGCTGAAGAAGCGGTTTCGGGTCTTGAGCATGGATGAAGTAGTTGACACGATACGGGGCGGGAAATACTTTG
CAAAACCTTCCGTCGCAATTACTTTCGATGATGGGTACCTGGATAACTACACCCTTGCGTACCCGGTTCTCAAGTCTCAT
GGTGTACCTGCAATGATCTACCTTGCAACTGGGCTTATCGGAACAAATGCCAGGACATGGCCGGACCAAATCGAAGCGGC
GCTTCTCGCGTCGACAAAGCAGACACTGTCACTCCCTGGGTTGCTGCCTGATTGCGGTGCTCCGATCAAGTCAATAGAGG
AAAAGCGGAGTTGCTGTATCCAGTTGTCGAGGGTTCTCAAGGGAATGCCCGATGCGGAAAGAAAAATACGATTGGTGAAT
ATTTTTCGCGAACTGGACGTTACGCTGGCATCGCTCGAAAACTCCAACAAGAGAACAATGTTGAATTGGGATGAAGTTAA
GGAGATGTCTGCCAACAAGATTAGTTTCGGCAGCCACAGTCATACGCACCCTATTTTGAGCCGTGTTCCACTTCACGAGG
CTCAGGACGATATCAGGTATTCAAAGCAGGTCCTGGAAGTGCAACTTGGCGGTAAGGTACGACATTTTGCGTATCCCAAC
GGGAGAAAAGAAGATTTTTCCGAGGACTTGCGATCGTACTGCAAGAAAATAGGCTTCGATACGGTGGCAACCGTAGTGTT
CGGAACCGTTGACGCTGGGGCTGACCCTTTTTCCCTTAAGCGGATTGGTGTGGTGAGCCCTGTCTGGAATATGGCTGGTG
AGTTGACGCGAAAGTTTATTCGTCGCGCGGGGGATCGCTGA

Upstream 100 bases:

>100_bases
ATCAGGGCGAATCCGATCGACATGAATGCCTATTTCGCTTTGAAGCGCTACGCCAGGTTTCTTTTCAGCAGGGCCACGTA
GAGTTCGTGGATTCCCCTTC

Downstream 100 bases:

>100_bases
TTTTCATGACTAGTTTGAAGAAAAAAACATTCGAGAATGTTGCCTATATAGGAGTTGCGCGGATTGTTGCGTTAGTTTTT
CAATCAATTGCGAACATAAT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Polysaccharide Deacetylase Family Protein; Polysaccharide Deacetylase Domain Protein; Polysaccharide Deacetylase Protein Pda4E; Polysaccharide Deacetylase Domain-Containing Protein; Xylanase/Chitin Deacetilase; Glycosyl Transferase Family Polysaccharide Deacetylase

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSVMIRMIWQTLRVGALFSMTTTDKILIAEKGRPESTVMKIKKTVKRGIYLILYHLHLFDAALVVVSWLRKEHPCIILLY
HRIVDDQTVYLDKGPVVHHHIRDFEREIAWLKKRFRVLSMDEVVDTIRGGKYFAKPSVAITFDDGYLDNYTLAYPVLKSH
GVPAMIYLATGLIGTNARTWPDQIEAALLASTKQTLSLPGLLPDCGAPIKSIEEKRSCCIQLSRVLKGMPDAERKIRLVN
IFRELDVTLASLENSNKRTMLNWDEVKEMSANKISFGSHSHTHPILSRVPLHEAQDDIRYSKQVLEVQLGGKVRHFAYPN
GRKEDFSEDLRSYCKKIGFDTVATVVFGTVDAGADPFSLKRIGVVSPVWNMAGELTRKFIRRAGDR

Sequences:

>Translated_386_residues
MSVMIRMIWQTLRVGALFSMTTTDKILIAEKGRPESTVMKIKKTVKRGIYLILYHLHLFDAALVVVSWLRKEHPCIILLY
HRIVDDQTVYLDKGPVVHHHIRDFEREIAWLKKRFRVLSMDEVVDTIRGGKYFAKPSVAITFDDGYLDNYTLAYPVLKSH
GVPAMIYLATGLIGTNARTWPDQIEAALLASTKQTLSLPGLLPDCGAPIKSIEEKRSCCIQLSRVLKGMPDAERKIRLVN
IFRELDVTLASLENSNKRTMLNWDEVKEMSANKISFGSHSHTHPILSRVPLHEAQDDIRYSKQVLEVQLGGKVRHFAYPN
GRKEDFSEDLRSYCKKIGFDTVATVVFGTVDAGADPFSLKRIGVVSPVWNMAGELTRKFIRRAGDR
>Mature_385_residues
SVMIRMIWQTLRVGALFSMTTTDKILIAEKGRPESTVMKIKKTVKRGIYLILYHLHLFDAALVVVSWLRKEHPCIILLYH
RIVDDQTVYLDKGPVVHHHIRDFEREIAWLKKRFRVLSMDEVVDTIRGGKYFAKPSVAITFDDGYLDNYTLAYPVLKSHG
VPAMIYLATGLIGTNARTWPDQIEAALLASTKQTLSLPGLLPDCGAPIKSIEEKRSCCIQLSRVLKGMPDAERKIRLVNI
FRELDVTLASLENSNKRTMLNWDEVKEMSANKISFGSHSHTHPILSRVPLHEAQDDIRYSKQVLEVQLGGKVRHFAYPNG
RKEDFSEDLRSYCKKIGFDTVATVVFGTVDAGADPFSLKRIGVVSPVWNMAGELTRKFIRRAGDR

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43837; Mature: 43705

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVMIRMIWQTLRVGALFSMTTTDKILIAEKGRPESTVMKIKKTVKRGIYLILYHLHLFD
CHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AALVVVSWLRKEHPCIILLYHRIVDDQTVYLDKGPVVHHHIRDFEREIAWLKKRFRVLSM
HHHHHHHHHHCCCCEEEEEEHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
DEVVDTIRGGKYFAKPSVAITFDDGYLDNYTLAYPVLKSHGVPAMIYLATGLIGTNARTW
HHHHHHHCCCCEEECCCEEEEECCCCCCCEEEEHHHHHCCCCCEEEHHHHHHCCCCCCCC
PDQIEAALLASTKQTLSLPGLLPDCGAPIKSIEEKRSCCIQLSRVLKGMPDAERKIRLVN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IFRELDVTLASLENSNKRTMLNWDEVKEMSANKISFGSHSHTHPILSRVPLHEAQDDIRY
HHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCEECCCCCCCCHHHHHCCCHHHHHHHHH
SKQVLEVQLGGKVRHFAYPNGRKEDFSEDLRSYCKKIGFDTVATVVFGTVDAGADPFSLK
HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHH
RIGVVSPVWNMAGELTRKFIRRAGDR
HCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVMIRMIWQTLRVGALFSMTTTDKILIAEKGRPESTVMKIKKTVKRGIYLILYHLHLFD
HHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AALVVVSWLRKEHPCIILLYHRIVDDQTVYLDKGPVVHHHIRDFEREIAWLKKRFRVLSM
HHHHHHHHHHCCCCEEEEEEHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
DEVVDTIRGGKYFAKPSVAITFDDGYLDNYTLAYPVLKSHGVPAMIYLATGLIGTNARTW
HHHHHHHCCCCEEECCCEEEEECCCCCCCEEEEHHHHHCCCCCEEEHHHHHHCCCCCCCC
PDQIEAALLASTKQTLSLPGLLPDCGAPIKSIEEKRSCCIQLSRVLKGMPDAERKIRLVN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
IFRELDVTLASLENSNKRTMLNWDEVKEMSANKISFGSHSHTHPILSRVPLHEAQDDIRY
HHHHHHHHHHHHCCCCCCEEECHHHHHHCCCCCEECCCCCCCCHHHHHCCCHHHHHHHHH
SKQVLEVQLGGKVRHFAYPNGRKEDFSEDLRSYCKKIGFDTVATVVFGTVDAGADPFSLK
HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHH
RIGVVSPVWNMAGELTRKFIRRAGDR
HCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA