Click here to switch to the map view.

The map label for this gene is xseB

Identifier: 78223143

GI number: 78223143

Start: 2161777

End: 2162007

Strand: Reverse

Name: xseB

Synonym: Gmet_1936

Alternate gene names: 78223143

Gene position: 2162007-2161777 (Counterclockwise)

Preceding gene: 78223144

Following gene: 78223142

Centisome position: 54.09

GC content: 52.81

Gene sequence:

>231_bases
ATGGCCGTAGAGAAGTTCGAGACTGCCCTCAAGAAACTGGAAGACGTGGTGAACCGGCTGGAAAGTGGTGAACTGTCCCT
GGACGACTCCCTCAAGGCTTTCGAGGAGGGAGTCAAGATGGCTGCTTTCTGCACGAAAAAGCTGGATGAAGCGGAAAAGA
AGGTGGAAATACTGCTCAAAAAGAAGGACGGCAGTTTTGCCAAGGAGCCGTTCCGGCTCGAGGATGACTGA

Upstream 100 bases:

>100_bases
CTTCGACTGGCATCGGTTTGCTGCCGGCTTTAGTGTAACTCCTTGACGCAGCTTGGCTAATCAGTATAATAAACCTTCTT
TTTTGTCGGAAAGGATGCCC

Downstream 100 bases:

>100_bases
AACAAGCGATTACTGATTTACAATATCACGCAAAGCGAGTTCCCATGGACCTTAAAAACTATCTCAAAGAACGCTGTGCC
ATTGTTGATGAAGCTCTTGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MAVEKFETALKKLEDVVNRLESGELSLDDSLKAFEEGVKMAAFCTKKLDEAEKKVEILLKKKDGSFAKEPFRLEDD

Sequences:

>Translated_76_residues
MAVEKFETALKKLEDVVNRLESGELSLDDSLKAFEEGVKMAAFCTKKLDEAEKKVEILLKKKDGSFAKEPFRLEDD
>Mature_75_residues
AVEKFETALKKLEDVVNRLESGELSLDDSLKAFEEGVKMAAFCTKKLDEAEKKVEILLKKKDGSFAKEPFRLEDD

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_GEOMG (Q39UA9)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_384890.1
- ProteinModelPortal:   Q39UA9
- SMR:   Q39UA9
- STRING:   Q39UA9
- GeneID:   3738120
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_1936
- NMPDR:   fig|269799.3.peg.2199
- eggNOG:   NOG87517
- HOGENOM:   HBG728416
- OMA:   PENASPV
- ProtClustDB:   PRK14066
- BioCyc:   GMET269799:GMET_1936-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8624; Mature: 8493

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVEKFETALKKLEDVVNRLESGELSLDDSLKAFEEGVKMAAFCTKKLDEAEKKVEILLK
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKDGSFAKEPFRLEDD
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVEKFETALKKLEDVVNRLESGELSLDDSLKAFEEGVKMAAFCTKKLDEAEKKVEILLK
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKDGSFAKEPFRLEDD
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA