| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is cooS1 [H]
Identifier: 78223109
GI number: 78223109
Start: 2122357
End: 2124366
Strand: Reverse
Name: cooS1 [H]
Synonym: Gmet_1902
Alternate gene names: 78223109
Gene position: 2124366-2122357 (Counterclockwise)
Preceding gene: 78223110
Following gene: 78223108
Centisome position: 53.14
GC content: 65.47
Gene sequence:
>2010_bases ATGAGCAAGAAGAACACGTTTCCAACCAAGGGCGATGTTATCGCCCGCACCCCCGATCCAGCGGTCCGAGCCATTCTGGA ACATCTGGACCAGGCCGGCATTGAGACCTCCTTCGATCGTTTCGATGCCCAGAAGCCCCACTGCGGTTTCGGCCTGGCCG GAACATGCTGCAAGAACTGCCACATGGGCCCCTGCCGGATTACGCCGAAAAGCCAGCGGGGCGTCTGCGGCGCCGATGCG CACCTGATCGTTGCCCGCAATATACTCCGCTGGACGGCGGCGGGTGTGGCGGCCCACGGGGCCCGGGGACGGGAGGTGAT GCTGGCCCTCAAAGGGGCGGCTGAAGGCGCTCTCGACCTGCCGATCCTCGGCCCGGAAAAGGTCGTGGCCACAGCCAAAG CGTTCGGGATCTTTGATGAAAATAAAGCCATCCCCCAGATGGCGGGTGAGATTGCCCTCATCCTCCTGGAGGACCTCTGC CGGACCATTCCCGGACCGCACCGGACCCTGGAGGCCATGGCGACTCCTGAGCGTCTTTCTGTCTGGAAGGAACTCGACAT CCTCCCAGTTGGGGCCTACCACGAGGTGTTCGAGGCCCTGCACCGCACCACCACCGGCACCGACGGCGATTGGGAAAACG TCATGCGCCAGGTGCTCCGCTGCGGCCTTGCCTTTGCCTGGAGCAGCGTGATGGGGTCCGCCGTCGCCATGGACTGTCTC TATGGTCTCCCCAAGCGGAGCCGGGTTTCAACCAATGTTGGAGCAATCACCGAAAATACCGTGAACATCGCCGTCCACGG CCATTCGCCGGTGCTGGTGGCTGCCATCCTTGCAGCAGCCCGGCGGACGGAGCTGATTGAGGAGGCGAAAGAAGCGGGGG CCGAGACCGTTCGGCTCTACGGCATCTGCTGCTCCGGCCACTCGGCCTTGGCCAAGTTCGGCGACGTTACCCCCCTCTCA AACGCCATGGGGGCGGAGCTGGTGCTGGCAACCGGCGCCCTTGACCTTTGGGTGGCCGATGTCCAGGACGTTTTCCCCGG CATCATGGACGTTGCCGCCTGCTTCCACACCCGGGTGGTTACCACCAGTGACTCGGCCCGGCTTCCCGGTGCCGAGCATA TTGCCTTTGACCACCATCACTCCAACCTCGACCAGGCCGACCAGTTGGCCCAGCGGATCGTGCGGCGCGGCATCCAGGCC TTCGGCGAGCGACAGGCAGGCAAGGTCTTCATCCCCCCTGCCCGGATGGACGCCGAGGTGGGCTTCTCCGTGGAGAATAT CACCGCCACCTTTGGCGGGGCAGACCGACTCCTTGAACACCTGCAGAGCGGCCGCATCCGCGGCGTGGTGAACCTCGTGG GGTGCAACAATCCCAAGGTGGTCTACGAGGAGGCGGTGGTGAAGGTGGCCGAGGAACTCATCGCCCACGACGTGGTGCTT CTGACCAACGGTTGTGCCGCCTTTGCCCTGCTGAAGATGGGCTTTTGCCTCCCCGAGGGGGTGACCGGGGCCGGTGATGG GTTAAAGAGCGTGCTCGGTCCCCTCAACTTGCCGCCGGTCTGGCACATGGGCGAATGCCTCGACAACGCCCGGGCTTCAG CGCTGTTCAAGGGCTTGGCCCTGACCGCAGCCGAGCCCCTGCGTCGTCTCCCCTGCGCCTTTTCCAGCCCCGAGTGGTCC AACGAGAAGGGGCTCGGCGCAGCCCTCGGCTTCCGCCTTCTTGGCCTTAACTCCTACCACTGCATCGCCCCGCCAGTGGC CGGCTCGGACAAGGTCGCCCGCTTTTTCGCCGAGGCCACCCGGGAAACCCTCGGATCGGTCATGGTGGTGGATGGAGACC CTGTAGCCCTTGCCCGCCGGATCGTCGCCGACTTCGATGAGCGTCGTGCCGCGCTCGGCTGGGCCCCCTGCGGCCCGCCT GCCTCGGCCCGGCTCATGGCGCTCCAGCAGGAGGCGGGCCACGCCCATGCCCACGCCCACGGGCACCCACATCATCACGA ACATCCGTAA
Upstream 100 bases:
>100_bases TTTTTCGGTTCACTTTATCTGTTGATGTTGTTTGTGTAACTTATAGTAATAAAGTCAAGAACAGATTTGATTAATATATC GAGCCAAGAGAGAGCAGATC
Downstream 100 bases:
>100_bases AGACGGAGGATATACCCATGAACAGACGCGACTTTCTCAAAACCTCGGGCCTGGCTTTGGCTGCTGCTGCCACTCCCTTC GGCCGTTTCGCCTGGGCCGG
Product: carbon-monoxide dehydrogenase, catalytic subunit
Products: NA
Alternate protein names: CODH 1 [H]
Number of amino acids: Translated: 669; Mature: 668
Protein sequence:
>669_residues MSKKNTFPTKGDVIARTPDPAVRAILEHLDQAGIETSFDRFDAQKPHCGFGLAGTCCKNCHMGPCRITPKSQRGVCGADA HLIVARNILRWTAAGVAAHGARGREVMLALKGAAEGALDLPILGPEKVVATAKAFGIFDENKAIPQMAGEIALILLEDLC RTIPGPHRTLEAMATPERLSVWKELDILPVGAYHEVFEALHRTTTGTDGDWENVMRQVLRCGLAFAWSSVMGSAVAMDCL YGLPKRSRVSTNVGAITENTVNIAVHGHSPVLVAAILAAARRTELIEEAKEAGAETVRLYGICCSGHSALAKFGDVTPLS NAMGAELVLATGALDLWVADVQDVFPGIMDVAACFHTRVVTTSDSARLPGAEHIAFDHHHSNLDQADQLAQRIVRRGIQA FGERQAGKVFIPPARMDAEVGFSVENITATFGGADRLLEHLQSGRIRGVVNLVGCNNPKVVYEEAVVKVAEELIAHDVVL LTNGCAAFALLKMGFCLPEGVTGAGDGLKSVLGPLNLPPVWHMGECLDNARASALFKGLALTAAEPLRRLPCAFSSPEWS NEKGLGAALGFRLLGLNSYHCIAPPVAGSDKVARFFAEATRETLGSVMVVDGDPVALARRIVADFDERRAALGWAPCGPP ASARLMALQQEAGHAHAHAHGHPHHHEHP
Sequences:
>Translated_669_residues MSKKNTFPTKGDVIARTPDPAVRAILEHLDQAGIETSFDRFDAQKPHCGFGLAGTCCKNCHMGPCRITPKSQRGVCGADA HLIVARNILRWTAAGVAAHGARGREVMLALKGAAEGALDLPILGPEKVVATAKAFGIFDENKAIPQMAGEIALILLEDLC RTIPGPHRTLEAMATPERLSVWKELDILPVGAYHEVFEALHRTTTGTDGDWENVMRQVLRCGLAFAWSSVMGSAVAMDCL YGLPKRSRVSTNVGAITENTVNIAVHGHSPVLVAAILAAARRTELIEEAKEAGAETVRLYGICCSGHSALAKFGDVTPLS NAMGAELVLATGALDLWVADVQDVFPGIMDVAACFHTRVVTTSDSARLPGAEHIAFDHHHSNLDQADQLAQRIVRRGIQA FGERQAGKVFIPPARMDAEVGFSVENITATFGGADRLLEHLQSGRIRGVVNLVGCNNPKVVYEEAVVKVAEELIAHDVVL LTNGCAAFALLKMGFCLPEGVTGAGDGLKSVLGPLNLPPVWHMGECLDNARASALFKGLALTAAEPLRRLPCAFSSPEWS NEKGLGAALGFRLLGLNSYHCIAPPVAGSDKVARFFAEATRETLGSVMVVDGDPVALARRIVADFDERRAALGWAPCGPP ASARLMALQQEAGHAHAHAHGHPHHHEHP >Mature_668_residues SKKNTFPTKGDVIARTPDPAVRAILEHLDQAGIETSFDRFDAQKPHCGFGLAGTCCKNCHMGPCRITPKSQRGVCGADAH LIVARNILRWTAAGVAAHGARGREVMLALKGAAEGALDLPILGPEKVVATAKAFGIFDENKAIPQMAGEIALILLEDLCR TIPGPHRTLEAMATPERLSVWKELDILPVGAYHEVFEALHRTTTGTDGDWENVMRQVLRCGLAFAWSSVMGSAVAMDCLY GLPKRSRVSTNVGAITENTVNIAVHGHSPVLVAAILAAARRTELIEEAKEAGAETVRLYGICCSGHSALAKFGDVTPLSN AMGAELVLATGALDLWVADVQDVFPGIMDVAACFHTRVVTTSDSARLPGAEHIAFDHHHSNLDQADQLAQRIVRRGIQAF GERQAGKVFIPPARMDAEVGFSVENITATFGGADRLLEHLQSGRIRGVVNLVGCNNPKVVYEEAVVKVAEELIAHDVVLL TNGCAAFALLKMGFCLPEGVTGAGDGLKSVLGPLNLPPVWHMGECLDNARASALFKGLALTAAEPLRRLPCAFSSPEWSN EKGLGAALGFRLLGLNSYHCIAPPVAGSDKVARFFAEATRETLGSVMVVDGDPVALARRIVADFDERRAALGWAPCGPPA SARLMALQQEAGHAHAHAHGHPHHHEHP
Specific function: Unknown
COG id: COG1151
COG function: function code C; 6Fe-6S prismane cluster-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ni-containing carbon monoxide dehydrogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016101 - InterPro: IPR010047 - InterPro: IPR004137 - InterPro: IPR011254 - InterPro: IPR016099 [H]
Pfam domain/function: PF03063 Prismane [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 71228; Mature: 71096
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKNTFPTKGDVIARTPDPAVRAILEHLDQAGIETSFDRFDAQKPHCGFGLAGTCCKNC CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHCC HMGPCRITPKSQRGVCGADAHLIVARNILRWTAAGVAAHGARGREVMLALKGAAEGALDL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC PILGPEKVVATAKAFGIFDENKAIPQMAGEIALILLEDLCRTIPGPHRTLEAMATPERLS CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHH VWKELDILPVGAYHEVFEALHRTTTGTDGDWENVMRQVLRCGLAFAWSSVMGSAVAMDCL HHHHCCCEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGLPKRSRVSTNVGAITENTVNIAVHGHSPVLVAAILAAARRTELIEEAKEAGAETVRLY HCCCCCCCCCCCCCCEEECEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE GICCSGHSALAKFGDVTPLSNAMGAELVLATGALDLWVADVQDVFPGIMDVAACFHTRVV EEEECCHHHHHHHCCCCCCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEE TTSDSARLPGAEHIAFDHHHSNLDQADQLAQRIVRRGIQAFGERQAGKVFIPPARMDAEV ECCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC GFSVENITATFGGADRLLEHLQSGRIRGVVNLVGCNNPKVVYEEAVVKVAEELIAHDVVL CCCHHHEEEECCCHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCHHE LTNGCAAFALLKMGFCLPEGVTGAGDGLKSVLGPLNLPPVWHMGECLDNARASALFKGLA EECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LTAAEPLRRLPCAFSSPEWSNEKGLGAALGFRLLGLNSYHCIAPPVAGSDKVARFFAEAT HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHH RETLGSVMVVDGDPVALARRIVADFDERRAALGWAPCGPPASARLMALQQEAGHAHAHAH HHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC GHPHHHEHP CCCCCCCCC >Mature Secondary Structure SKKNTFPTKGDVIARTPDPAVRAILEHLDQAGIETSFDRFDAQKPHCGFGLAGTCCKNC CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHCC HMGPCRITPKSQRGVCGADAHLIVARNILRWTAAGVAAHGARGREVMLALKGAAEGALDL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC PILGPEKVVATAKAFGIFDENKAIPQMAGEIALILLEDLCRTIPGPHRTLEAMATPERLS CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHH VWKELDILPVGAYHEVFEALHRTTTGTDGDWENVMRQVLRCGLAFAWSSVMGSAVAMDCL HHHHCCCEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGLPKRSRVSTNVGAITENTVNIAVHGHSPVLVAAILAAARRTELIEEAKEAGAETVRLY HCCCCCCCCCCCCCCEEECEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE GICCSGHSALAKFGDVTPLSNAMGAELVLATGALDLWVADVQDVFPGIMDVAACFHTRVV EEEECCHHHHHHHCCCCCCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEE TTSDSARLPGAEHIAFDHHHSNLDQADQLAQRIVRRGIQAFGERQAGKVFIPPARMDAEV ECCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC GFSVENITATFGGADRLLEHLQSGRIRGVVNLVGCNNPKVVYEEAVVKVAEELIAHDVVL CCCHHHEEEECCCHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCHHE LTNGCAAFALLKMGFCLPEGVTGAGDGLKSVLGPLNLPPVWHMGECLDNARASALFKGLA EECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LTAAEPLRRLPCAFSSPEWSNEKGLGAALGFRLLGLNSYHCIAPPVAGSDKVARFFAEAT HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHHH RETLGSVMVVDGDPVALARRIVADFDERRAALGWAPCGPPASARLMALQQEAGHAHAHAH HHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC GHPHHHEHP CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]