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The map label for this gene is pilC [H]

Identifier: 78223072

GI number: 78223072

Start: 2078196

End: 2079404

Strand: Reverse

Name: pilC [H]

Synonym: Gmet_1865

Alternate gene names: 78223072

Gene position: 2079404-2078196 (Counterclockwise)

Preceding gene: 78223073

Following gene: 78223071

Centisome position: 52.02

GC content: 51.78

Gene sequence:

>1209_bases
ATGGCTCTCTACACTTGCAAGCTTGGCTCCACAGAAGGCAGAATCATTGTCAAGGAATTTGAAGCGGTAAATCCCGAAAT
CCTTCGCGTCAGTCTGGAGGAACAGGGTTTTTTTGTCTTTGAAGTAAAAAAAAAGCCGTTGCAGTTTTTGTGGGAAAGGG
GCGGACGCAATAGGAGGGTGGACAACAAGACCCTTCTGACCTTGAACCAGGAACTGCTGGTTCTCATCAAGGCCGGCCTA
CCAATCATACAAGCACTGGATACCATTCTAGAGCGCTTTGATCGAGGGCAACTCGCGGATATTCTCAAGGAAGTCCGCGA
GAACGTCAAAGGAGGCATGGCTCTTTCCGATGCCTTGGAAAAGTATCCTAAGGCGTTTCCCCATCTCTATGTTGCTTCCG
TCAGGGCCGGCGAACGGACAGGAGACCTTCCCCTTACCATCAGGCGTTACATCGCTTTTCTGAAGAGGGTAGAGGAAGTG
CGGAAAAGATTCGTCTCAGCCCTCGTCTATCCATCGATTCTTGTTACCGTGGCAACCATCGCGATTGCTTTCCTGCTGGT
GTACGTGGTCCCGACCTTCAGCCAGGTTTATGCCGATGCCGGTTCGCAATTGCCGCTCCCCACAAGGATTTTGATCTCGT
TCTCCTCAACACTCAAACACTACATTCTCTTTGTTATTGCATTGATCGGTGCCGTTGTCATGGCCCTGCGTCGATGGGCC
GCAACCGAGCGGGGGCGCTTCTGGGTTGACGATCTCAGGATTCGCCTCCCTTTTATTGGTGAGGTTTTCTCGAAGTTTGC
CGTTGCTTCCTTTACCCGCACTCTCGCAACGGTCATCGGCAGCGGTATTCCTATCGTGGAGTCGCTGAAGATGTCGGTCG
GCACGCTTAATAATGTGGTTCTCGAAAGAAGGCTTCTCCAGGCGGTTGTTAAGGTGGAGGAGGGGATGAGCCTCTCCAAT
GCCATCGAGTCGGTAAAATTCATGCCACCTCTGGCGCTCCGCATGCTCGGGGTAGGAGAGACGACCGGATCTCTGGAGGA
GATGTTGAGCGACATCTCGGAATATTTTGAAAGTGATATCGATGCACGGCTTCATCTCCTTACCACTGCCATCGAACCCG
CCATTATGATTGTCATGGGGCTGGTGGTCGGCGTCATCATCATTACCATGTATCTTCCGGTATTCAAGATCGCTGGGACA
GTTGGATAA

Upstream 100 bases:

>100_bases
CTGCAATAGTTGATGCCACGGAATGTTAAGAATACGCTAAAACTGCGTATCTATTTGGTTTTTTGTTTATGTTTTGATTC
TGTTGTGTTAAGAAAGACCT

Downstream 100 bases:

>100_bases
TCAAGGGTCGGAGACTAATTGCGGGCACAGGGCCTGATCGGATCAAACCATTATGAAGCATGTCTTTAAAAGGAAGAATA
TCGGCGAAATTCTTATCGAA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MALYTCKLGSTEGRIIVKEFEAVNPEILRVSLEEQGFFVFEVKKKPLQFLWERGGRNRRVDNKTLLTLNQELLVLIKAGL
PIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFPHLYVASVRAGERTGDLPLTIRRYIAFLKRVEEV
RKRFVSALVYPSILVTVATIAIAFLLVYVVPTFSQVYADAGSQLPLPTRILISFSSTLKHYILFVIALIGAVVMALRRWA
ATERGRFWVDDLRIRLPFIGEVFSKFAVASFTRTLATVIGSGIPIVESLKMSVGTLNNVVLERRLLQAVVKVEEGMSLSN
AIESVKFMPPLALRMLGVGETTGSLEEMLSDISEYFESDIDARLHLLTTAIEPAIMIVMGLVVGVIIITMYLPVFKIAGT
VG

Sequences:

>Translated_402_residues
MALYTCKLGSTEGRIIVKEFEAVNPEILRVSLEEQGFFVFEVKKKPLQFLWERGGRNRRVDNKTLLTLNQELLVLIKAGL
PIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFPHLYVASVRAGERTGDLPLTIRRYIAFLKRVEEV
RKRFVSALVYPSILVTVATIAIAFLLVYVVPTFSQVYADAGSQLPLPTRILISFSSTLKHYILFVIALIGAVVMALRRWA
ATERGRFWVDDLRIRLPFIGEVFSKFAVASFTRTLATVIGSGIPIVESLKMSVGTLNNVVLERRLLQAVVKVEEGMSLSN
AIESVKFMPPLALRMLGVGETTGSLEEMLSDISEYFESDIDARLHLLTTAIEPAIMIVMGLVVGVIIITMYLPVFKIAGT
VG
>Mature_401_residues
ALYTCKLGSTEGRIIVKEFEAVNPEILRVSLEEQGFFVFEVKKKPLQFLWERGGRNRRVDNKTLLTLNQELLVLIKAGLP
IIQALDTILERFDRGQLADILKEVRENVKGGMALSDALEKYPKAFPHLYVASVRAGERTGDLPLTIRRYIAFLKRVEEVR
KRFVSALVYPSILVTVATIAIAFLLVYVVPTFSQVYADAGSQLPLPTRILISFSSTLKHYILFVIALIGAVVMALRRWAA
TERGRFWVDDLRIRLPFIGEVFSKFAVASFTRTLATVIGSGIPIVESLKMSVGTLNNVVLERRLLQAVVKVEEGMSLSNA
IESVKFMPPLALRMLGVGETTGSLEEMLSDISEYFESDIDARLHLLTTAIEPAIMIVMGLVVGVIIITMYLPVFKIAGTV
G

Specific function: Involved in the translocation of the type IV pilin (pilA) [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=401, Percent_Identity=27.1820448877805, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1786295, Length=335, Percent_Identity=25.3731343283582, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44764; Mature: 44633

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYTCKLGSTEGRIIVKEFEAVNPEILRVSLEEQGFFVFEVKKKPLQFLWERGGRNRRV
CCEEEEECCCCCCCEEEEHHHCCCHHHEEEEECCCCEEEEEECHHHHHHHHHCCCCCCCC
DNKTLLTLNQELLVLIKAGLPIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALE
CCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
KYPKAFPHLYVASVRAGERTGDLPLTIRRYIAFLKRVEEVRKRFVSALVYPSILVTVATI
HHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAFLLVYVVPTFSQVYADAGSQLPLPTRILISFSSTLKHYILFVIALIGAVVMALRRWA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATERGRFWVDDLRIRLPFIGEVFSKFAVASFTRTLATVIGSGIPIVESLKMSVGTLNNVV
HCCCCCEEHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LERRLLQAVVKVEEGMSLSNAIESVKFMPPLALRMLGVGETTGSLEEMLSDISEYFESDI
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
DARLHLLTTAIEPAIMIVMGLVVGVIIITMYLPVFKIAGTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALYTCKLGSTEGRIIVKEFEAVNPEILRVSLEEQGFFVFEVKKKPLQFLWERGGRNRRV
CEEEEECCCCCCCEEEEHHHCCCHHHEEEEECCCCEEEEEECHHHHHHHHHCCCCCCCC
DNKTLLTLNQELLVLIKAGLPIIQALDTILERFDRGQLADILKEVRENVKGGMALSDALE
CCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHH
KYPKAFPHLYVASVRAGERTGDLPLTIRRYIAFLKRVEEVRKRFVSALVYPSILVTVATI
HHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAFLLVYVVPTFSQVYADAGSQLPLPTRILISFSSTLKHYILFVIALIGAVVMALRRWA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATERGRFWVDDLRIRLPFIGEVFSKFAVASFTRTLATVIGSGIPIVESLKMSVGTLNNVV
HCCCCCEEHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LERRLLQAVVKVEEGMSLSNAIESVKFMPPLALRMLGVGETTGSLEEMLSDISEYFESDI
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
DARLHLLTTAIEPAIMIVMGLVVGVIIITMYLPVFKIAGTVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1971619; 10984043 [H]