Click here to switch to the map view.

The map label for this gene is 78222909

Identifier: 78222909

GI number: 78222909

Start: 1907479

End: 1908783

Strand: Direct

Name: 78222909

Synonym: Gmet_1700

Alternate gene names: NA

Gene position: 1907479-1908783 (Clockwise)

Preceding gene: 78222908

Following gene: 78222910

Centisome position: 47.72

GC content: 64.37

Gene sequence:

>1305_bases
ATGAAGTCCCGTCCCCGCCTCCTCTTGGTATATCCCGCCACCCACAAACTCGGGTGGGTGCGGCGGTTCCAGCTTCCCTC
CCTCTCCCTGAAACAGGTGGCTGCGGTAACCCCGCCGGAGTGGGAGGTTGTCATGGCCGACGAGGTCCATGAGGATGTTC
CCTTCGGTGAAAAGTTCGACCTGGTGGGGATCACTGCCATGACCCACCAGGCGGTCCGGGCCTACGAGATTGCCGACCGG
TTCCGGGCGCAGGGGGTGCCGGTGGTGCTGGGGGGAATCCATCCCACCGTGCTTCCTGAGGAGGCCCAGGCCCATGCCGA
TGCGGTCCTTATCGGGGAGGCCGAACCGGTCTGGGCAAAGCTTCTGGACGATTTTCTGGCGGGACGTCTGGCTCCCCTCT
ACCGGGCACCGATACCTACCGACGATCGCCTCGTGATCCCCTGGTCCCGGCGCGACATCCTGGCCGGCCGGCAGTACCTG
ACCACCCAGACGGTACAGGCTAGCCGGGGATGTCCCTATGACTGTCCCTTCTGCACCGTTACCCCGTACTTCGGCCGCAC
CTTCCGCTACCGAAATCCCGACGACGTCCTGGCCGAGCTCCGCTCCTTCGAGGGTAAGCTGATGGTGTTCGTGGACGACA
ACATTCTGGGGGACCCGGTCCGGGCCAAGCCGATCCTGGAGGGGATGGCGGGGATGAATCTCCGCTGGGGAGGGCAGGCG
AACCTCCGCTTTGCCGAAGACCCGGAACTGGTCAAGCTGGTGGCCCGTTCCGGCTGTATCGGGATCTTTGTCGGCATCGA
GTCGGTGACCGGTCCCCATGCGAATCACGCCAAGACCGGAAACGGCTCGTCGCAGATCGACCTGGTAAAGCGGGTCAGGG
ATGCCGGAATCGTGCTGGAGGCCTCCATGATCTTCGGGTTCGACGACCACGACGAGGGAATCTTCGAGCGGACGGTCCGT
TTCCTGGAGGAGTGCGCCCCCAGCATCCCCACCTTCAACGTCTTGACCCCTTACCCCGGCACGTCGCTTTTCAAACAGTT
CGACCGGGAGGGGCGGTTGCTCCACAAGGACTGGAGCCGCTACGACCATGGACAGGTGGTCTTCCGGCCCAAGCAGATGA
CTCCGGAGCGGCTCTACCGCGGCTGGCAGGAGGCCCGGTGGGAGGCCTACCGCCTCCCCGCCATCGCCTCGCGGGTGATG
AAAGGGAAGGGGAAGCTGGTCAACCTGGCCTACAATTTCCTCCGGCGCGGAGGGATCGAACGGCCGGACCGAATCGTCCA
CATACGCGAGGTTGCTGAACCATGA

Upstream 100 bases:

>100_bases
ACGGTGTCGGGGCCACCATGATTTTTGCGCTCGTGTCGCTTCCCGCGTTTCTCGTGGCGGGACGGCGGCGATCTCCGGCC
CCTGGCAGGGAGATACGCCC

Downstream 100 bases:

>100_bases
ATATCCTGCTTCTTCGCCCCCATCCAGGGAGTGATGCCTTTGGCCTCGGCCCCTTCTTCCGGGTCGAGCCGCTGGGTCTT
GAATACCTGGGGGCCGCCCT

Product: cobalamin B12-binding/radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MKSRPRLLLVYPATHKLGWVRRFQLPSLSLKQVAAVTPPEWEVVMADEVHEDVPFGEKFDLVGITAMTHQAVRAYEIADR
FRAQGVPVVLGGIHPTVLPEEAQAHADAVLIGEAEPVWAKLLDDFLAGRLAPLYRAPIPTDDRLVIPWSRRDILAGRQYL
TTQTVQASRGCPYDCPFCTVTPYFGRTFRYRNPDDVLAELRSFEGKLMVFVDDNILGDPVRAKPILEGMAGMNLRWGGQA
NLRFAEDPELVKLVARSGCIGIFVGIESVTGPHANHAKTGNGSSQIDLVKRVRDAGIVLEASMIFGFDDHDEGIFERTVR
FLEECAPSIPTFNVLTPYPGTSLFKQFDREGRLLHKDWSRYDHGQVVFRPKQMTPERLYRGWQEARWEAYRLPAIASRVM
KGKGKLVNLAYNFLRRGGIERPDRIVHIREVAEP

Sequences:

>Translated_434_residues
MKSRPRLLLVYPATHKLGWVRRFQLPSLSLKQVAAVTPPEWEVVMADEVHEDVPFGEKFDLVGITAMTHQAVRAYEIADR
FRAQGVPVVLGGIHPTVLPEEAQAHADAVLIGEAEPVWAKLLDDFLAGRLAPLYRAPIPTDDRLVIPWSRRDILAGRQYL
TTQTVQASRGCPYDCPFCTVTPYFGRTFRYRNPDDVLAELRSFEGKLMVFVDDNILGDPVRAKPILEGMAGMNLRWGGQA
NLRFAEDPELVKLVARSGCIGIFVGIESVTGPHANHAKTGNGSSQIDLVKRVRDAGIVLEASMIFGFDDHDEGIFERTVR
FLEECAPSIPTFNVLTPYPGTSLFKQFDREGRLLHKDWSRYDHGQVVFRPKQMTPERLYRGWQEARWEAYRLPAIASRVM
KGKGKLVNLAYNFLRRGGIERPDRIVHIREVAEP
>Mature_434_residues
MKSRPRLLLVYPATHKLGWVRRFQLPSLSLKQVAAVTPPEWEVVMADEVHEDVPFGEKFDLVGITAMTHQAVRAYEIADR
FRAQGVPVVLGGIHPTVLPEEAQAHADAVLIGEAEPVWAKLLDDFLAGRLAPLYRAPIPTDDRLVIPWSRRDILAGRQYL
TTQTVQASRGCPYDCPFCTVTPYFGRTFRYRNPDDVLAELRSFEGKLMVFVDDNILGDPVRAKPILEGMAGMNLRWGGQA
NLRFAEDPELVKLVARSGCIGIFVGIESVTGPHANHAKTGNGSSQIDLVKRVRDAGIVLEASMIFGFDDHDEGIFERTVR
FLEECAPSIPTFNVLTPYPGTSLFKQFDREGRLLHKDWSRYDHGQVVFRPKQMTPERLYRGWQEARWEAYRLPAIASRVM
KGKGKLVNLAYNFLRRGGIERPDRIVHIREVAEP

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 48966; Mature: 48966

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRPRLLLVYPATHKLGWVRRFQLPSLSLKQVAAVTPPEWEVVMADEVHEDVPFGEKFD
CCCCCCEEEEECCCCCCCHHEEECCCCCCHHHHHCCCCCCCEEEECCHHHHCCCCCCCCC
LVGITAMTHQAVRAYEIADRFRAQGVPVVLGGIHPTVLPEEAQAHADAVLIGEAEPVWAK
EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCEEEEECCCHHHHH
LLDDFLAGRLAPLYRAPIPTDDRLVIPWSRRDILAGRQYLTTQTVQASRGCPYDCPFCTV
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCEE
TPYFGRTFRYRNPDDVLAELRSFEGKLMVFVDDNILGDPVRAKPILEGMAGMNLRWGGQA
CCCCCCEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECCCC
NLRFAEDPELVKLVARSGCIGIFVGIESVTGPHANHAKTGNGSSQIDLVKRVRDAGIVLE
CCEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE
ASMIFGFDDHDEGIFERTVRFLEECAPSIPTFNVLTPYPGTSLFKQFDREGRLLHKDWSR
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCEEHHHHHC
YDHGQVVFRPKQMTPERLYRGWQEARWEAYRLPAIASRVMKGKGKLVNLAYNFLRRGGIE
CCCCEEEEECCCCCHHHHHCCHHHHCHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCC
RPDRIVHIREVAEP
CCHHEEEHHHHCCC
>Mature Secondary Structure
MKSRPRLLLVYPATHKLGWVRRFQLPSLSLKQVAAVTPPEWEVVMADEVHEDVPFGEKFD
CCCCCCEEEEECCCCCCCHHEEECCCCCCHHHHHCCCCCCCEEEECCHHHHCCCCCCCCC
LVGITAMTHQAVRAYEIADRFRAQGVPVVLGGIHPTVLPEEAQAHADAVLIGEAEPVWAK
EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCEEEEECCCHHHHH
LLDDFLAGRLAPLYRAPIPTDDRLVIPWSRRDILAGRQYLTTQTVQASRGCPYDCPFCTV
HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCEE
TPYFGRTFRYRNPDDVLAELRSFEGKLMVFVDDNILGDPVRAKPILEGMAGMNLRWGGQA
CCCCCCEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECCCC
NLRFAEDPELVKLVARSGCIGIFVGIESVTGPHANHAKTGNGSSQIDLVKRVRDAGIVLE
CCEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEE
ASMIFGFDDHDEGIFERTVRFLEECAPSIPTFNVLTPYPGTSLFKQFDREGRLLHKDWSR
EEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCEEHHHHHC
YDHGQVVFRPKQMTPERLYRGWQEARWEAYRLPAIASRVMKGKGKLVNLAYNFLRRGGIE
CCCCEEEEECCCCCHHHHHCCHHHHCHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCCC
RPDRIVHIREVAEP
CCHHEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]