Click here to switch to the map view.

The map label for this gene is pqqE [H]

Identifier: 78222896

GI number: 78222896

Start: 1894364

End: 1895746

Strand: Direct

Name: pqqE [H]

Synonym: Gmet_1687

Alternate gene names: 78222896

Gene position: 1894364-1895746 (Clockwise)

Preceding gene: 78222895

Following gene: 78222897

Centisome position: 47.39

GC content: 60.38

Gene sequence:

>1383_bases
ATGCTGCAAAGCCTTAAAAACTATTCAACGGAAAAGATCGTTTCGCTCCTCCTGTCTCTGGCCACCAACTCGTCCAACGA
GACCCTGGCTCGGATGACCCACCTGATGGAGCTGATCCCGAAAAAAGACTACTACCGGGAGCGGATCCGGTGGATCAGGC
AGCTCATCCGGGAAAACCATCCGAGCATCGAGTTTCCCCGCCGGATCCTCCGCGACCTCCACCCCAACCAGCGCGACAAG
TGGATCACCAACCTGGCGGTGAACCACCTCCTGATAGGGACCAACAAGCGGAAGGCCTGGGCCGACCGGGAAGGGTACTA
TCCCCCTTCCACGGTAGTCATCAGCCCCACCATGAAATGCAACCTCTCCTGCTACGGCTGTTATGCCGGCGATTACGGCA
AGGGGCTGGAACTCTCACTGGAGGAGGTGGACTCGGTCCTGACCCAGATGAAGGAGATGGGGGTCTACTTCGCGGTCATC
TCCGGCGGTGAGCCGTTTTTCATGCCGAATATCTTCGAGATCTTCCGCAAGCATTCCGACATGGCGTTCCTGGTCTTTAC
CCACGGCGGGCTCATCGACGAGGCCATGGTTGAGCGGCTGATCGAGGTGGGGAACGTCATGCCCGCCTTTTCCCTGGAGG
GGTATGAGCCGGAAACCGACGAGCGGCGCGGTCCCGGTCACTTCCGCAAGGTCATGGGGGCCATGGATCTTTTGCGGAAC
GCGGGGCTCTCCTTCTGCGGCTCCTTCACCCAGACCAGCAGGAACACCCCGGTCATCACCGACGGAAGCTTCATCGACAT
GCTCCTGGAGAAGGGGGTATTCGCCCTCTGGCTCTTCACCTACGTGCCGGTGGGGCGAGATCCGAACCTGGAACTGATGG
CCACGCCCGAGCAGCGGGACCTTCTTCGGACGAGGGTCGCCGAGTTCCGCGCCACCAAGCCGATGCTCTTCATCGATTTC
TGGAACGACGGCCCCATCATCAGCGGCTGCATCGCCGGAGGACGGAAATACTTCCACATCAACGCCAACGGCGACATCGA
GCCGTGCGTTTTCTGTCACTTTGCCGTGGACAACATCCGCCGTACCTCTCTCAAGGATGCGCTCCGGTCGCCGCTCTTCC
AGAAGATCCGCCAGCAGCAGGGGGAGCATGAGAATCTCCTCCGTCCCTGCATGCTGATCGACCACCCCGAGGTGGGACGG
GAACTCTTCAACTCCGAAGGGGTCTATCCGACCCATGAGGGCGCTGCCGAGATATTTACCGGCCTTGCCGGGCAGGTGGA
TGCCTACGCTACGGAGTATGCCGGGATCGCCGATCCCGCATGGGAGCGGGAATTCGTCGATACCGGCCGCGCTGAAAAGA
AAGTGAAGAACCGTAAGCGGTGA

Upstream 100 bases:

>100_bases
CCGGGTGGCGGACGGCCGGGCCACCAGCCATTTCCGGCCGGTGCGCGACACCTGGAACATTTGCATGACATTTCTTCGGT
ATATGTAGGGAACTCTAGCC

Downstream 100 bases:

>100_bases
CCTATTACAACAGTATCAACCTGTTCCTGATCAACCTGTTCACCCGCCTCGTGCCGCGGTGGCTTTTCCCCCCCTTTGCC
TTTGTCACCGCCGGGATTGT

Product: radical SAM family protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MLQSLKNYSTEKIVSLLLSLATNSSNETLARMTHLMELIPKKDYYRERIRWIRQLIRENHPSIEFPRRILRDLHPNQRDK
WITNLAVNHLLIGTNKRKAWADREGYYPPSTVVISPTMKCNLSCYGCYAGDYGKGLELSLEEVDSVLTQMKEMGVYFAVI
SGGEPFFMPNIFEIFRKHSDMAFLVFTHGGLIDEAMVERLIEVGNVMPAFSLEGYEPETDERRGPGHFRKVMGAMDLLRN
AGLSFCGSFTQTSRNTPVITDGSFIDMLLEKGVFALWLFTYVPVGRDPNLELMATPEQRDLLRTRVAEFRATKPMLFIDF
WNDGPIISGCIAGGRKYFHINANGDIEPCVFCHFAVDNIRRTSLKDALRSPLFQKIRQQQGEHENLLRPCMLIDHPEVGR
ELFNSEGVYPTHEGAAEIFTGLAGQVDAYATEYAGIADPAWEREFVDTGRAEKKVKNRKR

Sequences:

>Translated_460_residues
MLQSLKNYSTEKIVSLLLSLATNSSNETLARMTHLMELIPKKDYYRERIRWIRQLIRENHPSIEFPRRILRDLHPNQRDK
WITNLAVNHLLIGTNKRKAWADREGYYPPSTVVISPTMKCNLSCYGCYAGDYGKGLELSLEEVDSVLTQMKEMGVYFAVI
SGGEPFFMPNIFEIFRKHSDMAFLVFTHGGLIDEAMVERLIEVGNVMPAFSLEGYEPETDERRGPGHFRKVMGAMDLLRN
AGLSFCGSFTQTSRNTPVITDGSFIDMLLEKGVFALWLFTYVPVGRDPNLELMATPEQRDLLRTRVAEFRATKPMLFIDF
WNDGPIISGCIAGGRKYFHINANGDIEPCVFCHFAVDNIRRTSLKDALRSPLFQKIRQQQGEHENLLRPCMLIDHPEVGR
ELFNSEGVYPTHEGAAEIFTGLAGQVDAYATEYAGIADPAWEREFVDTGRAEKKVKNRKR
>Mature_460_residues
MLQSLKNYSTEKIVSLLLSLATNSSNETLARMTHLMELIPKKDYYRERIRWIRQLIRENHPSIEFPRRILRDLHPNQRDK
WITNLAVNHLLIGTNKRKAWADREGYYPPSTVVISPTMKCNLSCYGCYAGDYGKGLELSLEEVDSVLTQMKEMGVYFAVI
SGGEPFFMPNIFEIFRKHSDMAFLVFTHGGLIDEAMVERLIEVGNVMPAFSLEGYEPETDERRGPGHFRKVMGAMDLLRN
AGLSFCGSFTQTSRNTPVITDGSFIDMLLEKGVFALWLFTYVPVGRDPNLELMATPEQRDLLRTRVAEFRATKPMLFIDF
WNDGPIISGCIAGGRKYFHINANGDIEPCVFCHFAVDNIRRTSLKDALRSPLFQKIRQQQGEHENLLRPCMLIDHPEVGR
ELFNSEGVYPTHEGAAEIFTGLAGQVDAYATEYAGIADPAWEREFVDTGRAEKKVKNRKR

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 52479; Mature: 52479

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQSLKNYSTEKIVSLLLSLATNSSNETLARMTHLMELIPKKDYYRERIRWIRQLIRENH
CCCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
PSIEFPRRILRDLHPNQRDKWITNLAVNHLLIGTNKRKAWADREGYYPPSTVVISPTMKC
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCCCEEECCCEEE
NLSCYGCYAGDYGKGLELSLEEVDSVLTQMKEMGVYFAVISGGEPFFMPNIFEIFRKHSD
CCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCC
MAFLVFTHGGLIDEAMVERLIEVGNVMPAFSLEGYEPETDERRGPGHFRKVMGAMDLLRN
CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AGLSFCGSFTQTSRNTPVITDGSFIDMLLEKGVFALWLFTYVPVGRDPNLELMATPEQRD
CCHHHHCCHHHCCCCCCEEECCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCHHHH
LLRTRVAEFRATKPMLFIDFWNDGPIISGCIAGGRKYFHINANGDIEPCVFCHFAVDNIR
HHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHCCEEEEEEECCCCCCHHEEEEHHHHHHH
RTSLKDALRSPLFQKIRQQQGEHENLLRPCMLIDHPEVGRELFNSEGVYPTHEGAAEIFT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
GLAGQVDAYATEYAGIADPAWEREFVDTGRAEKKVKNRKR
HHCCCHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MLQSLKNYSTEKIVSLLLSLATNSSNETLARMTHLMELIPKKDYYRERIRWIRQLIRENH
CCCCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
PSIEFPRRILRDLHPNQRDKWITNLAVNHLLIGTNKRKAWADREGYYPPSTVVISPTMKC
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECCCCHHCCCCCCCCCCCCEEECCCEEE
NLSCYGCYAGDYGKGLELSLEEVDSVLTQMKEMGVYFAVISGGEPFFMPNIFEIFRKHSD
CCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCC
MAFLVFTHGGLIDEAMVERLIEVGNVMPAFSLEGYEPETDERRGPGHFRKVMGAMDLLRN
CEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AGLSFCGSFTQTSRNTPVITDGSFIDMLLEKGVFALWLFTYVPVGRDPNLELMATPEQRD
CCHHHHCCHHHCCCCCCEEECCHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCHHHH
LLRTRVAEFRATKPMLFIDFWNDGPIISGCIAGGRKYFHINANGDIEPCVFCHFAVDNIR
HHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHCCEEEEEEECCCCCCHHEEEEHHHHHHH
RTSLKDALRSPLFQKIRQQQGEHENLLRPCMLIDHPEVGRELFNSEGVYPTHEGAAEIFT
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
GLAGQVDAYATEYAGIADPAWEREFVDTGRAEKKVKNRKR
HHCCCHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA