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The map label for this gene is bphB [H]

Identifier: 78222879

GI number: 78222879

Start: 1876825

End: 1878009

Strand: Reverse

Name: bphB [H]

Synonym: Gmet_1670

Alternate gene names: 78222879

Gene position: 1878009-1876825 (Counterclockwise)

Preceding gene: 78222881

Following gene: 78222878

Centisome position: 46.98

GC content: 52.91

Gene sequence:

>1185_bases
GTGGTCGAGAATAAGTCCGTTCGCATTTTGTATATGGAAGATGACGCTGGTTTAGCCAGGCTGTTGCAGAGAAAATTGCA
GCGACAGTCCTTCTCGGTTGAAATCGCCAGAAACGGTGACGACGGCTTGGCTACGCTCGGGAAAGCACCCTTCGATGTCG
TGCTGCTCGATTACAGCATGCCCTCATGCGATGGCATCGACGTCTTGCGGATCATGGCGGAGTGCAAAACCTCTCCTCCG
GTGATCATGCTAACCGGCAGAGGGAATGAAAAAATCGCGGTTGAAGCATTGCAACTGGGGGCCAGCGACTACATCGTGAA
AGATGTGGATATGGGTTATCTGGAACTTCTTCCCGTCGTCATCGATCAGGTTTTGCAGAAACAGCAGTTGATCCGGGAAC
GCGAGCAGATGCTCAAGGCCCTTCAGGAGAGCGAGGATCGATACAGAAGGCTCAGTGCCCAGCTTGAACGGATGGTTCTG
GAACGCACCGAGGATCTGCAGACTTCCAACAGGGAACTGGAAGTTTTTTGTTATTCCGTGTCACATGATCTCTCGGCCCC
ACTCCGTACGATCAATGGCTTCAGCGAGGTTCTGCTCGAAGAGTATGGTGATCGACTGGATAATGCCGGCAGACGGTGTC
TCTCGAAAATAGGCGCGGCCGCCACTCGAATGGTGCAGCTGATTGACGCGCTGCTCGACCTTTCAACAATGGCGACCGAC
GAACCACGCCTCGAACCCGTGAACTTGAGCGACCTCGCAGGGGAAATCGCACAGGAGCTGCACGACCTCGAGCAACAACA
CAAGGTTGACGTCAGGATAACCGGCGGCATGGAAGTGGAAGGTGATCCTGCCCTGCTTAGAGTTATGATGGAGAACCTGC
TGGGGAATGCATGGAAGTTCAGTAGAACTCTGCCTGACGCCTGTATCGAGTTCGGAAAATCGTTTCAAAACGGGGAGATG
GCATATTACGTGCGCGACAACGGAATCGGTTTTGACCTGGGTAATTCCGGCAAACTGATCGAGCTTTTCCAGAGGCTGCA
CCTCGGGGATGAATTCAAAGGCATCGGAATCGGGCTCGCAACAGTCCAACGCATTGTCGAACGCCACAATGGAAGAATTT
GGGCTGAAAGTGAAGTCGGTAAAGGTGCGACGTTCTATTTCACCCTTTCACCCATAGCCAATTAA

Upstream 100 bases:

>100_bases
TATGATAAGTAAGCATTGCTGAGCGGCCAGGGGAATAGACCTGGCGGCTTTACTTCACAAGCTGTGTGGAACCATGCGAT
GGAATTAATCAGGAGGATTT

Downstream 100 bases:

>100_bases
ACAACTGATACGCTACAGCTCCACGCGCCTGGTCCTGCCTCAAATACCTCAAGCCTGTCATTGAGACTTTCCAAAACATT
GGTTAGATAGGTTCGCTCCG

Product: response regulator receiver sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MVENKSVRILYMEDDAGLARLLQRKLQRQSFSVEIARNGDDGLATLGKAPFDVVLLDYSMPSCDGIDVLRIMAECKTSPP
VIMLTGRGNEKIAVEALQLGASDYIVKDVDMGYLELLPVVIDQVLQKQQLIREREQMLKALQESEDRYRRLSAQLERMVL
ERTEDLQTSNRELEVFCYSVSHDLSAPLRTINGFSEVLLEEYGDRLDNAGRRCLSKIGAAATRMVQLIDALLDLSTMATD
EPRLEPVNLSDLAGEIAQELHDLEQQHKVDVRITGGMEVEGDPALLRVMMENLLGNAWKFSRTLPDACIEFGKSFQNGEM
AYYVRDNGIGFDLGNSGKLIELFQRLHLGDEFKGIGIGLATVQRIVERHNGRIWAESEVGKGATFYFTLSPIAN

Sequences:

>Translated_394_residues
MVENKSVRILYMEDDAGLARLLQRKLQRQSFSVEIARNGDDGLATLGKAPFDVVLLDYSMPSCDGIDVLRIMAECKTSPP
VIMLTGRGNEKIAVEALQLGASDYIVKDVDMGYLELLPVVIDQVLQKQQLIREREQMLKALQESEDRYRRLSAQLERMVL
ERTEDLQTSNRELEVFCYSVSHDLSAPLRTINGFSEVLLEEYGDRLDNAGRRCLSKIGAAATRMVQLIDALLDLSTMATD
EPRLEPVNLSDLAGEIAQELHDLEQQHKVDVRITGGMEVEGDPALLRVMMENLLGNAWKFSRTLPDACIEFGKSFQNGEM
AYYVRDNGIGFDLGNSGKLIELFQRLHLGDEFKGIGIGLATVQRIVERHNGRIWAESEVGKGATFYFTLSPIAN
>Mature_394_residues
MVENKSVRILYMEDDAGLARLLQRKLQRQSFSVEIARNGDDGLATLGKAPFDVVLLDYSMPSCDGIDVLRIMAECKTSPP
VIMLTGRGNEKIAVEALQLGASDYIVKDVDMGYLELLPVVIDQVLQKQQLIREREQMLKALQESEDRYRRLSAQLERMVL
ERTEDLQTSNRELEVFCYSVSHDLSAPLRTINGFSEVLLEEYGDRLDNAGRRCLSKIGAAATRMVQLIDALLDLSTMATD
EPRLEPVNLSDLAGEIAQELHDLEQQHKVDVRITGGMEVEGDPALLRVMMENLLGNAWKFSRTLPDACIEFGKSFQNGEM
AYYVRDNGIGFDLGNSGKLIELFQRLHLGDEFKGIGIGLATVQRIVERHNGRIWAESEVGKGATFYFTLSPIAN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=137, Percent_Identity=35.7664233576642, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI48994928, Length=235, Percent_Identity=26.8085106382979, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789149, Length=256, Percent_Identity=25.78125, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI145693157, Length=240, Percent_Identity=24.1666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789402, Length=101, Percent_Identity=39.6039603960396, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1786600, Length=220, Percent_Identity=29.0909090909091, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790437, Length=112, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786784, Length=101, Percent_Identity=30.6930693069307, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786783, Length=249, Percent_Identity=26.1044176706827, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789809, Length=107, Percent_Identity=31.7757009345794, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 44132; Mature: 44132

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVENKSVRILYMEDDAGLARLLQRKLQRQSFSVEIARNGDDGLATLGKAPFDVVLLDYSM
CCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCEEEEEECCC
PSCDGIDVLRIMAECKTSPPVIMLTGRGNEKIAVEALQLGASDYIVKDVDMGYLELLPVV
CCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHCCCCCCEEECCCCCHHHHHHHH
IDQVLQKQQLIREREQMLKALQESEDRYRRLSAQLERMVLERTEDLQTSNRELEVFCYSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
SHDLSAPLRTINGFSEVLLEEYGDRLDNAGRRCLSKIGAAATRMVQLIDALLDLSTMATD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPRLEPVNLSDLAGEIAQELHDLEQQHKVDVRITGGMEVEGDPALLRVMMENLLGNAWKF
CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCHHHHHHHHHHHCCCCHHH
SRTLPDACIEFGKSFQNGEMAYYVRDNGIGFDLGNSGKLIELFQRLHLGDEFKGIGIGLA
HCCCHHHHHHHCCCCCCCCEEEEEECCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHH
TVQRIVERHNGRIWAESEVGKGATFYFTLSPIAN
HHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MVENKSVRILYMEDDAGLARLLQRKLQRQSFSVEIARNGDDGLATLGKAPFDVVLLDYSM
CCCCCCEEEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCEEEEEECCC
PSCDGIDVLRIMAECKTSPPVIMLTGRGNEKIAVEALQLGASDYIVKDVDMGYLELLPVV
CCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHCCCCCCEEECCCCCHHHHHHHH
IDQVLQKQQLIREREQMLKALQESEDRYRRLSAQLERMVLERTEDLQTSNRELEVFCYSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
SHDLSAPLRTINGFSEVLLEEYGDRLDNAGRRCLSKIGAAATRMVQLIDALLDLSTMATD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPRLEPVNLSDLAGEIAQELHDLEQQHKVDVRITGGMEVEGDPALLRVMMENLLGNAWKF
CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCHHHHHHHHHHHCCCCHHH
SRTLPDACIEFGKSFQNGEMAYYVRDNGIGFDLGNSGKLIELFQRLHLGDEFKGIGIGLA
HCCCHHHHHHHCCCCCCCCEEEEEECCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHH
TVQRIVERHNGRIWAESEVGKGATFYFTLSPIAN
HHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]