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The map label for this gene is smpB

Identifier: 78222855

GI number: 78222855

Start: 1848042

End: 1848560

Strand: Direct

Name: smpB

Synonym: Gmet_1646

Alternate gene names: 78222855

Gene position: 1848042-1848560 (Clockwise)

Preceding gene: 78222854

Following gene: 78222856

Centisome position: 46.23

GC content: 52.02

Gene sequence:

>519_bases
TTGCAAGGGCTTTTTACTCCTTGCAATGATTTCGCCATATCTGCTACTATCACTTTCATGGGAGAAAAGCTGATCTGCAA
CAACAAGAAAGCGTTTCACGATTACTTTATTGAGGAACGTTTTGAAGCGGGAATGGTCCTGAAGGGGACCGAAGTCAAAT
CGCTCCGCATGGGGAAGGCGAACCTCAACGACTCTTTCGCCCTGGTCCGTGACGGTGAAATCTTTCTGCACAATCTCCAT
ATCAACCCTTACGATTTCGGCAATCGCCAGAACCACGATCCGGACAGGCTGCGCAAGCTCCTGATGCATAAGAGCGAGAT
TGAAAAGCTCTTCGGCAAGATCCGCGAAAAGGGGTACTCGGTTGTCCCGCTCCGCCTCTACTTCAAGAACGGCCTCGCCA
AAGTGGAGCTGGGCCTTGCCAAGGGGAAGAAGCTGTACGACAAGCGCGAGGACATGAAGAAGAAAGACCAGTCGAGGGAG
ATGGCCCAGGCCCTCAGGGAAAGAAGCAAGAGCCACTGA

Upstream 100 bases:

>100_bases
ATTCATTCGGGAGAGATTCTTCAGGTTTTCCTTGCCGGCAATCTCGTTGTTAGCCGGGAGGCGTTTTCTTGACCGTGCGC
AAACCTCTTTTTTCCTGTAA

Downstream 100 bases:

>100_bases
TAAGAGTTTACAAGGGGGTGTACAGGTTTCGACGGGGATAGGAAACTAAAGGTTGCATGCCGAGGTCCGGGCTGGCCTCG
TTAAAAAGCCCGGGGCGAAT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MQGLFTPCNDFAISATITFMGEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH
INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSRE
MAQALRERSKSH

Sequences:

>Translated_172_residues
MQGLFTPCNDFAISATITFMGEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH
INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSRE
MAQALRERSKSH
>Mature_172_residues
MQGLFTPCNDFAISATITFMGEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH
INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSRE
MAQALRERSKSH

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=151, Percent_Identity=49.6688741721854, Blast_Score=149, Evalue=9e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 19984; Mature: 19984

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGLFTPCNDFAISATITFMGEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKA
CCCCCCCCCCCEEEEHHEECCCEEEECCCHHHHHHHHHHHHCCCEEEECCCHHHEECCCC
NLNDSFALVRDGEIFLHNLHINPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYS
CCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSREMAQALRERSKSH
EEEEEEEECCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQGLFTPCNDFAISATITFMGEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKA
CCCCCCCCCCCEEEEHHEECCCEEEECCCHHHHHHHHHHHHCCCEEEECCCHHHEECCCC
NLNDSFALVRDGEIFLHNLHINPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYS
CCCCCEEEEECCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
VVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSREMAQALRERSKSH
EEEEEEEECCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA