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The map label for this gene is rtcB [C]

Identifier: 78222828

GI number: 78222828

Start: 1817957

End: 1819414

Strand: Reverse

Name: rtcB [C]

Synonym: Gmet_1619

Alternate gene names: 78222828

Gene position: 1819414-1817957 (Counterclockwise)

Preceding gene: 78222829

Following gene: 78222825

Centisome position: 45.51

GC content: 63.44

Gene sequence:

>1458_bases
ATGCCCGCACCATCGGCCCTCAAGAGGATAACCGACACCACCTGGGAGCTTCCCGTTTCCTATAAACCCGGCATGTTGGT
GCCGGCCCGGATATTCGCCACGGAGAAACTGATCACCGCCATGGACGCCGGGGTCTTTGACCAGGTGTCAAACGTGGCCT
GCCTCCCCGGCATCCAGAAGTATGCCTTCTGCATGCCCGACGGCCACTGGGGGTACGGGTTCCCCATCGGCGGCCTGGCG
GCCATGGATCCGGAAACCGGCGTCATCTCCCCCGGCGGTATCGGCTTCGACATCAACTGCGGCATGCGGCTTGTCCTCAC
CAATCTCACCGAAGAAGAGGTCAAGCCACGTCTCAGGGAGCTGGTGGACGCCCTCTTCTACCGAGTGCCGGCAGGGGTCG
GGAGCCACGGTTTCGTCAGCCTTTCCCACGATGAGTTCTGTACCGTTGCCGAGCAGGGGTCCCGCTGGTGCCTGAAGAGG
GGGTTCGCCTGGCCCGAGGACCTGGAGATGACTGAGGAAGGTGGCTGTTTCCCGGGGGCCGACGCTTCAAAGATCAGCCA
CAAGGCCATAGACCGTGGTTACAACCAGATCGGCACCCTCGGCTCGGGCAACCACTATCTGGAGATTCAGGTGGCTCGGC
CGGAGAACATATACAACGAGGAGCTTGCCAGGGCCTTCGGCATCACCATCCCGAACCAGGTGGTGATCATGTTCCACTGT
GGCAGCCGGGGCTTCGGGCATCAGGTGGCCACCGACTACCTGCAGCTCTTTCTGTCGGTCATGGAGCGGAAATACGGCAT
CACCGTCAACGACCGGGAATTGGCCTGTGCACCGTTCCGTTCCCGGGAGGGGCAGGACTACTTCGCCGCCATGAAGTGCG
CCGTCAACATGGCCTTTGCCAACCGGCAGGTGATCCTCCACCGCATCCGCGAGGTCTTTTCCGACAACTTCGGCCGCGAC
CCCGCCGACCTGGGAATGGAGATGGTCTACGATGTGGCCCACAACACCGCGAAGCTGGAGACCCACATGGTTGACGGACG
AAGGCGAGAACTCCTCATTCACCGCAAGGGGGCGACCCGCGCATTCGGCCCCGGCATGGAAGGGTTGCCCGAACGCTACC
GGGAAACGGGCCAGCCGGTCATCATCGGCGGGAGCATGGAGACGGGTTCCTACCTTCTGGCGGGAGAGCCCGGGGGAAGC
GAAACCTTCTTCACCACGGCCCACGGCAGCGGACGGACCATGAGCAGGCACCAGGCCAAGAAGATGGTGAGGGGACAGAA
GCTGCAGCGGGACATGGAGGAGCGGGGAATTTACGTGCGGACCGCTTCGTGGGGCGGGCTTGCCGAGGAGTCGGGACGGG
CGTACAAGGACATCGACGACGTTGCCGAGGCGACGGAACGGGCCCACCTGAGCCGGCGGGTCGTGCGACTTCTCCCCATC
GGCAATGTCAAGGGGTAG

Upstream 100 bases:

>100_bases
ATATACTTGCATACTTACCCATACACCCCTCCATCCCCCCTTCCGGCAAAAGACTTTTCCTGTGTTATAGTGTACCAAGT
CCGCGAAAGGAGGTCAGGTC

Downstream 100 bases:

>100_bases
GTGCCAGGCGAACGATCAGGTAAGAAAGTCGACAATCAGCCCCTTGAGTTCCATGATTTTGTTGGTGATCTTCAGGCGGT
CCTTGTTTTCCGTCATGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MPAPSALKRITDTTWELPVSYKPGMLVPARIFATEKLITAMDAGVFDQVSNVACLPGIQKYAFCMPDGHWGYGFPIGGLA
AMDPETGVISPGGIGFDINCGMRLVLTNLTEEEVKPRLRELVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKR
GFAWPEDLEMTEEGGCFPGADASKISHKAIDRGYNQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHC
GSRGFGHQVATDYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIREVFSDNFGRD
PADLGMEMVYDVAHNTAKLETHMVDGRRRELLIHRKGATRAFGPGMEGLPERYRETGQPVIIGGSMETGSYLLAGEPGGS
ETFFTTAHGSGRTMSRHQAKKMVRGQKLQRDMEERGIYVRTASWGGLAEESGRAYKDIDDVAEATERAHLSRRVVRLLPI
GNVKG

Sequences:

>Translated_485_residues
MPAPSALKRITDTTWELPVSYKPGMLVPARIFATEKLITAMDAGVFDQVSNVACLPGIQKYAFCMPDGHWGYGFPIGGLA
AMDPETGVISPGGIGFDINCGMRLVLTNLTEEEVKPRLRELVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKR
GFAWPEDLEMTEEGGCFPGADASKISHKAIDRGYNQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHC
GSRGFGHQVATDYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIREVFSDNFGRD
PADLGMEMVYDVAHNTAKLETHMVDGRRRELLIHRKGATRAFGPGMEGLPERYRETGQPVIIGGSMETGSYLLAGEPGGS
ETFFTTAHGSGRTMSRHQAKKMVRGQKLQRDMEERGIYVRTASWGGLAEESGRAYKDIDDVAEATERAHLSRRVVRLLPI
GNVKG
>Mature_484_residues
PAPSALKRITDTTWELPVSYKPGMLVPARIFATEKLITAMDAGVFDQVSNVACLPGIQKYAFCMPDGHWGYGFPIGGLAA
MDPETGVISPGGIGFDINCGMRLVLTNLTEEEVKPRLRELVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKRG
FAWPEDLEMTEEGGCFPGADASKISHKAIDRGYNQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHCG
SRGFGHQVATDYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAAMKCAVNMAFANRQVILHRIREVFSDNFGRDP
ADLGMEMVYDVAHNTAKLETHMVDGRRRELLIHRKGATRAFGPGMEGLPERYRETGQPVIIGGSMETGSYLLAGEPGGSE
TFFTTAHGSGRTMSRHQAKKMVRGQKLQRDMEERGIYVRTASWGGLAEESGRAYKDIDDVAEATERAHLSRRVVRLLPIG
NVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=498, Percent_Identity=43.7751004016064, Blast_Score=396, Evalue=1e-110,
Organism=Escherichia coli, GI2367224, Length=449, Percent_Identity=28.7305122494432, Blast_Score=135, Evalue=8e-33,
Organism=Caenorhabditis elegans, GI17506665, Length=498, Percent_Identity=44.9799196787149, Blast_Score=415, Evalue=1e-116,
Organism=Drosophila melanogaster, GI24585217, Length=497, Percent_Identity=43.0583501006036, Blast_Score=391, Evalue=1e-109,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 53569; Mature: 53438

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS01288 UPF0027

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPSALKRITDTTWELPVSYKPGMLVPARIFATEKLITAMDAGVFDQVSNVACLPGIQK
CCCHHHHHHHCCCCEECCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHCCEECCCCCCH
YAFCMPDGHWGYGFPIGGLAAMDPETGVISPGGIGFDINCGMRLVLTNLTEEEVKPRLRE
HEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHHHH
LVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKRGFAWPEDLEMTEEGGCFPGA
HHHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
DASKISHKAIDRGYNQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHC
CHHHHHHHHHHHCHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEC
GSRGFGHQVATDYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAAMKCAVNMAFA
CCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
NRQVILHRIREVFSDNFGRDPADLGMEMVYDVAHNTAKLETHMVDGRRRELLIHRKGATR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCC
AFGPGMEGLPERYRETGQPVIIGGSMETGSYLLAGEPGGSETFFTTAHGSGRTMSRHQAK
CCCCCCCHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHH
KMVRGQKLQRDMEERGIYVRTASWGGLAEESGRAYKDIDDVAEATERAHLSRRVVRLLPI
HHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GNVKG
CCCCC
>Mature Secondary Structure 
PAPSALKRITDTTWELPVSYKPGMLVPARIFATEKLITAMDAGVFDQVSNVACLPGIQK
CCHHHHHHHCCCCEECCCCCCCCCEECHHHHHHHHHHHHHCCCHHHHHCCEECCCCCCH
YAFCMPDGHWGYGFPIGGLAAMDPETGVISPGGIGFDINCGMRLVLTNLTEEEVKPRLRE
HEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCEEEEECCCHHHHHHHHHH
LVDALFYRVPAGVGSHGFVSLSHDEFCTVAEQGSRWCLKRGFAWPEDLEMTEEGGCFPGA
HHHHHHHHCCCCCCCCCEEEECCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
DASKISHKAIDRGYNQIGTLGSGNHYLEIQVARPENIYNEELARAFGITIPNQVVIMFHC
CHHHHHHHHHHHCHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEC
GSRGFGHQVATDYLQLFLSVMERKYGITVNDRELACAPFRSREGQDYFAAMKCAVNMAFA
CCCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHH
NRQVILHRIREVFSDNFGRDPADLGMEMVYDVAHNTAKLETHMVDGRRRELLIHRKGATR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCC
AFGPGMEGLPERYRETGQPVIIGGSMETGSYLLAGEPGGSETFFTTAHGSGRTMSRHQAK
CCCCCCCHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHH
KMVRGQKLQRDMEERGIYVRTASWGGLAEESGRAYKDIDDVAEATERAHLSRRVVRLLPI
HHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GNVKG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]