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The map label for this gene is psd [H]

Identifier: 78222695

GI number: 78222695

Start: 1675609

End: 1676607

Strand: Reverse

Name: psd [H]

Synonym: Gmet_1483

Alternate gene names: 78222695

Gene position: 1676607-1675609 (Counterclockwise)

Preceding gene: 78222696

Following gene: 78222694

Centisome position: 41.94

GC content: 62.96

Gene sequence:

>999_bases
ATGATTGACCAGCATCAATACATCGAACGTGAAAGCGGATCTGTCTGCAACGAACGACTCTTCGGCGACCGGCTGATCCG
GCTCCTCTACCACGGGGCGCGGGAAAACGCGCCGTTTCTCTTTAAAATGGCCACCAGTAGCTGGTCGTCGGGTCTGCTCG
GCTTCATCAACTTCGACCTCCCCTTCGGCAGCAACCGCCGTTTTCTGGAAGAATGCGGAGTGGACTTGGACGAGTGCCTC
GATCCGCCCGAGTCCCTCGACACGCCCCGCAAGGTCTTTGAACGGAGGATCCGCTACGAGCAGTGCCGTCCCATGCCCGA
GGTGCAGTGGGCCGTGGTCTCGCCGGCTGACGCCCGGGTGCTGGTCGGATCGTTTCGTGACACCTCGGCCCTCTTCCTCA
AGGAAAAGTTCTTCGACTTCGAGGAGCTGCTGGGCCGCCACAAGGAGGAATGGCTCCGGGCGTTCACCGGCGGGGAATTC
GCCGTGTTCCGCCTGACGCCGGACAAATACCACTACAACCATACCCCGGTGGCGGGAACGGTGCGCGACATCTATGAAAT
CGACGGCGGTTACCACTCATGCAACCCGGGAGCCGTCGTCATCGAAGCGACCCCTTTCTCCAAAAACCGACGGGTGGTGA
CGGTCATCGATACCGACGTGCCGGGGGGAACCGGCGTGGGGCTCGTGGCGATGATCGAGGTGGTGGCCCTCATGATCGGC
CAGATCGTGCAGTGCTACAGCTATGAGGGGTACACGGCCCCGCGCCCCGTCGAGCCCGGCATGTTCCTTCGCCGAGGGGT
GCCCAAGAGCCTCTACCGCCCCGGCAGCAGCACCGATGTCCTCATCTTCCAGCGGGACCGGATGCACTTTGCCGACGACA
TCGTGCGCAACATGCACGACACCCGGGCCGCGAGCCGCTTCTCCCACGGTTTCGGGCGCCCCCTGGTCGAAACCGACGTC
AAGGTCCGTTCGCTCATCGCCGTTGCGGTAACGAACTGA

Upstream 100 bases:

>100_bases
AGTCGCTGCGGACGGTCATCGCGCTGGTTATTGCCAGTATTGCGAACGATACAGAGCATGCCGCAGCACGTATCAACGCC
CACAAGGTGAGGCACTTGCA

Downstream 100 bases:

>100_bases
ACCATCAGGAGCCGTCCATGACCCTATTCATAGTAGTCACTGCCGTTTTGTCAGCCATCTACCTCTGGTGGGGAATCAGA
TTTCTGCCGGCGGAGCGCTG

Product: phosphatidylserine decarboxylase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MIDQHQYIERESGSVCNERLFGDRLIRLLYHGARENAPFLFKMATSSWSSGLLGFINFDLPFGSNRRFLEECGVDLDECL
DPPESLDTPRKVFERRIRYEQCRPMPEVQWAVVSPADARVLVGSFRDTSALFLKEKFFDFEELLGRHKEEWLRAFTGGEF
AVFRLTPDKYHYNHTPVAGTVRDIYEIDGGYHSCNPGAVVIEATPFSKNRRVVTVIDTDVPGGTGVGLVAMIEVVALMIG
QIVQCYSYEGYTAPRPVEPGMFLRRGVPKSLYRPGSSTDVLIFQRDRMHFADDIVRNMHDTRAASRFSHGFGRPLVETDV
KVRSLIAVAVTN

Sequences:

>Translated_332_residues
MIDQHQYIERESGSVCNERLFGDRLIRLLYHGARENAPFLFKMATSSWSSGLLGFINFDLPFGSNRRFLEECGVDLDECL
DPPESLDTPRKVFERRIRYEQCRPMPEVQWAVVSPADARVLVGSFRDTSALFLKEKFFDFEELLGRHKEEWLRAFTGGEF
AVFRLTPDKYHYNHTPVAGTVRDIYEIDGGYHSCNPGAVVIEATPFSKNRRVVTVIDTDVPGGTGVGLVAMIEVVALMIG
QIVQCYSYEGYTAPRPVEPGMFLRRGVPKSLYRPGSSTDVLIFQRDRMHFADDIVRNMHDTRAASRFSHGFGRPLVETDV
KVRSLIAVAVTN
>Mature_332_residues
MIDQHQYIERESGSVCNERLFGDRLIRLLYHGARENAPFLFKMATSSWSSGLLGFINFDLPFGSNRRFLEECGVDLDECL
DPPESLDTPRKVFERRIRYEQCRPMPEVQWAVVSPADARVLVGSFRDTSALFLKEKFFDFEELLGRHKEEWLRAFTGGEF
AVFRLTPDKYHYNHTPVAGTVRDIYEIDGGYHSCNPGAVVIEATPFSKNRRVVTVIDTDVPGGTGVGLVAMIEVVALMIG
QIVQCYSYEGYTAPRPVEPGMFLRRGVPKSLYRPGSSTDVLIFQRDRMHFADDIVRNMHDTRAASRFSHGFGRPLVETDV
KVRSLIAVAVTN

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 2 subfamily [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6321609, Length=296, Percent_Identity=25.6756756756757, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 37640; Mature: 37640

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDQHQYIERESGSVCNERLFGDRLIRLLYHGARENAPFLFKMATSSWSSGLLGFINFDL
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEC
PFGSNRRFLEECGVDLDECLDPPESLDTPRKVFERRIRYEQCRPMPEVQWAVVSPADARV
CCCCCCHHHHHHCCCHHHHCCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEE
LVGSFRDTSALFLKEKFFDFEELLGRHKEEWLRAFTGGEFAVFRLTPDKYHYNHTPVAGT
EEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH
VRDIYEIDGGYHSCNPGAVVIEATPFSKNRRVVTVIDTDVPGGTGVGLVAMIEVVALMIG
HHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
QIVQCYSYEGYTAPRPVEPGMFLRRGVPKSLYRPGSSTDVLIFQRDRMHFADDIVRNMHD
HHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH
TRAASRFSHGFGRPLVETDVKVRSLIAVAVTN
HHHHHHHHHCCCCCHHHHHHHHHEEEEEEECC
>Mature Secondary Structure
MIDQHQYIERESGSVCNERLFGDRLIRLLYHGARENAPFLFKMATSSWSSGLLGFINFDL
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEC
PFGSNRRFLEECGVDLDECLDPPESLDTPRKVFERRIRYEQCRPMPEVQWAVVSPADARV
CCCCCCHHHHHHCCCHHHHCCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEE
LVGSFRDTSALFLKEKFFDFEELLGRHKEEWLRAFTGGEFAVFRLTPDKYHYNHTPVAGT
EEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH
VRDIYEIDGGYHSCNPGAVVIEATPFSKNRRVVTVIDTDVPGGTGVGLVAMIEVVALMIG
HHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
QIVQCYSYEGYTAPRPVEPGMFLRRGVPKSLYRPGSSTDVLIFQRDRMHFADDIVRNMHD
HHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH
TRAASRFSHGFGRPLVETDVKVRSLIAVAVTN
HHHHHHHHHCCCCCHHHHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11889109 [H]