| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is pilQ [H]
Identifier: 78222195
GI number: 78222195
Start: 1082821
End: 1085433
Strand: Direct
Name: pilQ [H]
Synonym: Gmet_0975
Alternate gene names: 78222195
Gene position: 1082821-1085433 (Clockwise)
Preceding gene: 78222194
Following gene: 78222196
Centisome position: 27.09
GC content: 57.29
Gene sequence:
>2613_bases ATGAGAATCCAACTCACAATATCCCGCAACCTTGCCTTTCTGTCCCTGTTGGGCGCGTTGTGCGGCTGTGCCGCCACTAA CGCCTCCGTTATGGGCGACAAGGAGACGAGCCAGTCCTCGGCTCCGGTGATCCGGGACATCCGCGTTACGGGGGAGGGAG ACAATGCCCAGGTAAGCATCTCGGCTAACCGTCCCCTCGCGTACACTTTTTACATGGCGGCGAATCCTCCCAAGGCGGTC GTAGATCTTGCCCAGGTGCAACCGGGTGCCTTTTCCGCGCCCATGGAGATCAACGCCGGAAACATCAAGCGGATTGCCAC CACCCGTGTGGGTGAGGGGGAAGCCGCCATGACCCGGGTAGAGGTCTTCCTTGCCCGGGATGCGGAGATGACGGCTGCCA CGGATCCCGCCGACAAGGGAACAATGCGTCTGGCCTTTGTCCCCCCGCCGGTTCCTGCTTCTGCCGCACCGGCCAAAGCC GAGCCGCCGGCGCCTGCCGCTGCGCCGGAACCGGTAGCTCCGCAGCCCGCTAATACGCCTGTAGCTGCAGAACGTAAAAT CGCCGATGCCATCACCGCCATTACTCCCCGTAAAGACTCCCTTGAAATCCGGACCACGGGCGAGGTGGCCGATTTCAAGA CGTTCCGGCTCACGAAGCCCGACCGCCTCGTGCTCGATGTCTTCGGCGTCAAAGCGGCCCTGGCCCAAAAGGTTGTGCCG GTCAACAGCCTTGGGATCGAGACCGTCCGGGTAGGCGCCTATCCCGACAAGGTGCGTCTTGTCCTCGATGCTTCAGGTGA CACCCTTCCCGCCTTCACGGTGGAGAAGACCGCCGCCGGCCTCGCCGTGGTTCCGTCATCATCCCCGGCTGCCGTCGCGG CGAAGTCTCGTGAGTCCGAGCAGACGACACCCGCCCTTGTGACGGGCGCGGCTCCCAAGGCGGAAGCCAAGCCCGTTGTG CATGCCGGGGCACCTGAAGTAGATTCGATAGAATTCAAAGTGGTGGATGCCATCTCCCGCATCGCCATTGAAACGACTGC CCCGTGCAACGCTGAAAAGCCAGTCAAGTCCGCCGAAGGTCTGACGCTTACTCTCAAGAACTGCATTCTGCCGCGGAAAT GGCAGCGGCATCTCGACACGAGCGCTTTTGCCAGCGTTGTCCAGAAGGTGACCCCCTACCAGGTCAAGGTAAAGGGGCGT CACGACGTGAAAGTGCAGGTCGCGTTACGGAGGCAGACTTCCTATGAGTTGCGCAGGGAAGGGGGAGTCATTTACCTTGA CCTGAAGAATCCGGTTGATATCACTGCGGCACCGGTCGCATCGGAGCCGGCCAAGCAGACCGAGTCTGAACGGTCCGCTC CTGTGGTCGTCAAATCACAGGCTGTTTCACCGACGGCAGCCGCGGACGGGAAAAAGGTCTACACGGGGCGCCGGGTCACC CTCGAATTCTCCGATGCCGATATCAGGAAGATCTTCCAACTTATTGCCGAAGTCAGCAATCTGAACTTCATCGTCGGTGA CGATGTCACCGGCACCATCAGCCTAAAGCTGGTGAACGTTCCCTGGGACCAGGCCCTCGACGTAATTCTTGAGAACAAGG GGCTCGGGATGCAGCGGGACGGCAACATCGTTCAGATCCGTCCCAAATCCAAAATCATGACCCTTGCCGATGAAGAGCAG AAGGCCAAAAAGTCCCGCGAACAGGGGATGGAACTCAAGACCGAGGTCTTTGACGTCAACTATGCCGCAGTGGGCGATGT GGTCACCCAGTTCAACACCCTCAAGAGCGAGCGGGGGATGATTTCCCAGGATGCCCGCACCAACCGGGTCATCGTCAAGG ATATCGCACCGGTGGTGGCGGAGATGAGGAATCTGCTGAAGAGTCTCGACATCCCCGAGAAACAGGTAATGATCGAGGCC AGAATCGTTGAGGCGAGTTCCACTGTCACTCAGGAACTCGGCATTCAATGGGGCATACACGCTCGTGATGCGAATACTAT TGGCGTGACGAATGCTGACGTGGGGTTTGGTGGAATCCTCACCGGGCTTGCGCCAACTGCGGGTACATTCGGTCCTGGTG CTGCGGCCGGCATAACATTTGGGAAACTCATTTCCGGCGGGTCCCTTGACCTGAAACTGTCCGCATTGGCTTCGGGAGAG AGGATAAAGATAATTTCATCGCCCAAAGTCGTGACCCTTAACAACAAAGCAGCCAAAATATCCCAGGGACAATCTATTCC TTATTCGACTGTCTCTGCTGAAGGGACGAAAACAGAATTCGTTGAAGCGGCATTGACGCTGGAAGTGACGCCCCACATTG CTTCCGATGGAAGCATCAGTATGAAGATCAAGGCGACTAACAACTCTGCTGCGCCAGCACCGACAGGGGCTGTTCCGGCA ATAAACAAGAAAGAGGCGACCACAGAGCTTTTGGTAAGGAATGGTGAAACCACAGTTATTGGCGGGATTTACGTGGATAA TGATTCTCAGGCTGATCAGGGCGTCCCGTTCTTTAAAGATATCCCATTGCTTGGCTGGCTGTTCAAGTCAAGCAATACGC AAAAAATCAAGAACGAACTGCTAATTTTCATTACTCCTAAAATCGTTCTGTAA
Upstream 100 bases:
>100_bases GCTGAACGCGTCAGGAACGACGTCACCGGCAAAATAAGCCGGCGGTTGGTGAAACTCGCCCTGCCAAAGAAAAACTAACA GGCTGCCAAGGAGACTCCCC
Downstream 100 bases:
>100_bases TGAACAGGGTTCCATAAAGACAATTTTTACCATGCCAGGGGTATCCCCTGGCATTTCTTTACTAAAGAGGTGAGTATGCT CCGCTACCTGACCGCCGGCG
Product: type II and III secretion system secretin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 870; Mature: 870
Protein sequence:
>870_residues MRIQLTISRNLAFLSLLGALCGCAATNASVMGDKETSQSSAPVIRDIRVTGEGDNAQVSISANRPLAYTFYMAANPPKAV VDLAQVQPGAFSAPMEINAGNIKRIATTRVGEGEAAMTRVEVFLARDAEMTAATDPADKGTMRLAFVPPPVPASAAPAKA EPPAPAAAPEPVAPQPANTPVAAERKIADAITAITPRKDSLEIRTTGEVADFKTFRLTKPDRLVLDVFGVKAALAQKVVP VNSLGIETVRVGAYPDKVRLVLDASGDTLPAFTVEKTAAGLAVVPSSSPAAVAAKSRESEQTTPALVTGAAPKAEAKPVV HAGAPEVDSIEFKVVDAISRIAIETTAPCNAEKPVKSAEGLTLTLKNCILPRKWQRHLDTSAFASVVQKVTPYQVKVKGR HDVKVQVALRRQTSYELRREGGVIYLDLKNPVDITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVT LEFSDADIRKIFQLIAEVSNLNFIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRDGNIVQIRPKSKIMTLADEEQ KAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGMISQDARTNRVIVKDIAPVVAEMRNLLKSLDIPEKQVMIEA RIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGE RIKIISSPKVVTLNNKAAKISQGQSIPYSTVSAEGTKTEFVEAALTLEVTPHIASDGSISMKIKATNNSAAPAPTGAVPA INKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQKIKNELLIFITPKIVL
Sequences:
>Translated_870_residues MRIQLTISRNLAFLSLLGALCGCAATNASVMGDKETSQSSAPVIRDIRVTGEGDNAQVSISANRPLAYTFYMAANPPKAV VDLAQVQPGAFSAPMEINAGNIKRIATTRVGEGEAAMTRVEVFLARDAEMTAATDPADKGTMRLAFVPPPVPASAAPAKA EPPAPAAAPEPVAPQPANTPVAAERKIADAITAITPRKDSLEIRTTGEVADFKTFRLTKPDRLVLDVFGVKAALAQKVVP VNSLGIETVRVGAYPDKVRLVLDASGDTLPAFTVEKTAAGLAVVPSSSPAAVAAKSRESEQTTPALVTGAAPKAEAKPVV HAGAPEVDSIEFKVVDAISRIAIETTAPCNAEKPVKSAEGLTLTLKNCILPRKWQRHLDTSAFASVVQKVTPYQVKVKGR HDVKVQVALRRQTSYELRREGGVIYLDLKNPVDITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVT LEFSDADIRKIFQLIAEVSNLNFIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRDGNIVQIRPKSKIMTLADEEQ KAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGMISQDARTNRVIVKDIAPVVAEMRNLLKSLDIPEKQVMIEA RIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGE RIKIISSPKVVTLNNKAAKISQGQSIPYSTVSAEGTKTEFVEAALTLEVTPHIASDGSISMKIKATNNSAAPAPTGAVPA INKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQKIKNELLIFITPKIVL >Mature_870_residues MRIQLTISRNLAFLSLLGALCGCAATNASVMGDKETSQSSAPVIRDIRVTGEGDNAQVSISANRPLAYTFYMAANPPKAV VDLAQVQPGAFSAPMEINAGNIKRIATTRVGEGEAAMTRVEVFLARDAEMTAATDPADKGTMRLAFVPPPVPASAAPAKA EPPAPAAAPEPVAPQPANTPVAAERKIADAITAITPRKDSLEIRTTGEVADFKTFRLTKPDRLVLDVFGVKAALAQKVVP VNSLGIETVRVGAYPDKVRLVLDASGDTLPAFTVEKTAAGLAVVPSSSPAAVAAKSRESEQTTPALVTGAAPKAEAKPVV HAGAPEVDSIEFKVVDAISRIAIETTAPCNAEKPVKSAEGLTLTLKNCILPRKWQRHLDTSAFASVVQKVTPYQVKVKGR HDVKVQVALRRQTSYELRREGGVIYLDLKNPVDITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVT LEFSDADIRKIFQLIAEVSNLNFIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRDGNIVQIRPKSKIMTLADEEQ KAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGMISQDARTNRVIVKDIAPVVAEMRNLLKSLDIPEKQVMIEA RIVEASSTVTQELGIQWGIHARDANTIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGE RIKIISSPKVVTLNNKAAKISQGQSIPYSTVSAEGTKTEFVEAALTLEVTPHIASDGSISMKIKATNNSAAPAPTGAVPA INKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIPLLGWLFKSSNTQKIKNELLIFITPKIVL
Specific function: Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a "porthole" allowing passage of the fimbrae through the outer membrane [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=400, Percent_Identity=33, Blast_Score=210, Evalue=3e-55, Organism=Escherichia coli, GI87082242, Length=340, Percent_Identity=28.2352941176471, Blast_Score=111, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 92122; Mature: 92122
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIQLTISRNLAFLSLLGALCGCAATNASVMGDKETSQSSAPVIRDIRVTGEGDNAQVSI CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEE SANRPLAYTFYMAANPPKAVVDLAQVQPGAFSAPMEINAGNIKRIATTRVGEGEAAMTRV ECCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEEEEECCCCHHHHEEE EVFLARDAEMTAATDPADKGTMRLAFVPPPVPASAAPAKAEPPAPAAAPEPVAPQPANTP EEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VAAERKIADAITAITPRKDSLEIRTTGEVADFKTFRLTKPDRLVLDVFGVKAALAQKVVP CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCC VNSLGIETVRVGAYPDKVRLVLDASGDTLPAFTVEKTAAGLAVVPSSSPAAVAAKSRESE CCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCEEEECCCCCC QTTPALVTGAAPKAEAKPVVHAGAPEVDSIEFKVVDAISRIAIETTAPCNAEKPVKSAEG CCCCEEEECCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHEEEECCCCCCCCCCCCCCC LTLTLKNCILPRKWQRHLDTSAFASVVQKVTPYQVKVKGRHDVKVQVALRRQTSYELRRE CEEEHHHCCCCHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCHHHHHHC GGVIYLDLKNPVDITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVT CCEEEEECCCCCCEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEECCEEE LEFSDADIRKIFQLIAEVSNLNFIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRD EEECCCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEEEECCHHHHHHHEECCCCCCCCCC GNIVQIRPKSKIMTLADEEQKAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGM CCEEEECCCCCEEEECCHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCC ISQDARTNRVIVKDIAPVVAEMRNLLKSLDIPEKQVMIEARIVEASSTVTQELGIQWGIH CCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECHHHHHHHHCCEECEE ARDANTIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGE ECCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHCCHHHHCCCCCCEEEEEEECCCC RIKIISSPKVVTLNNKAAKISQGQSIPYSTVSAEGTKTEFVEAALTLEVTPHIASDGSIS EEEEECCCEEEEECCCCEECCCCCCCCCEEECCCCCHHHEEEEEEEEEECCCCCCCCCEE MKIKATNNSAAPAPTGAVPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKD EEEEECCCCCCCCCCCCCCCCCCCHHCEEHEEECCCEEEEEEEEECCCCCCCCCCCCHHC IPLLGWLFKSSNTQKIKNELLIFITPKIVL CCCEEEEECCCCHHHHCCCEEEEEECEEEC >Mature Secondary Structure MRIQLTISRNLAFLSLLGALCGCAATNASVMGDKETSQSSAPVIRDIRVTGEGDNAQVSI CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEE SANRPLAYTFYMAANPPKAVVDLAQVQPGAFSAPMEINAGNIKRIATTRVGEGEAAMTRV ECCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEEEEECCCCHHHHEEE EVFLARDAEMTAATDPADKGTMRLAFVPPPVPASAAPAKAEPPAPAAAPEPVAPQPANTP EEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC VAAERKIADAITAITPRKDSLEIRTTGEVADFKTFRLTKPDRLVLDVFGVKAALAQKVVP CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCC VNSLGIETVRVGAYPDKVRLVLDASGDTLPAFTVEKTAAGLAVVPSSSPAAVAAKSRESE CCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCEEEECCCCCC QTTPALVTGAAPKAEAKPVVHAGAPEVDSIEFKVVDAISRIAIETTAPCNAEKPVKSAEG CCCCEEEECCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHEEEECCCCCCCCCCCCCCC LTLTLKNCILPRKWQRHLDTSAFASVVQKVTPYQVKVKGRHDVKVQVALRRQTSYELRRE CEEEHHHCCCCHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCHHHHHHC GGVIYLDLKNPVDITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVT CCEEEEECCCCCCEEECCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEECCEEE LEFSDADIRKIFQLIAEVSNLNFIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRD EEECCCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEEEECCHHHHHHHEECCCCCCCCCC GNIVQIRPKSKIMTLADEEQKAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGM CCEEEECCCCCEEEECCHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCC ISQDARTNRVIVKDIAPVVAEMRNLLKSLDIPEKQVMIEARIVEASSTVTQELGIQWGIH CCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEEECHHHHHHHHCCEECEE ARDANTIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGE ECCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHCCHHHHCCCCCCEEEEEEECCCC RIKIISSPKVVTLNNKAAKISQGQSIPYSTVSAEGTKTEFVEAALTLEVTPHIASDGSIS EEEEECCCEEEEECCCCEECCCCCCCCCEEECCCCCHHHEEEEEEEEEECCCCCCCCCEE MKIKATNNSAAPAPTGAVPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKD EEEEECCCCCCCCCCCCCCCCCCCHHCEEHEEECCCEEEEEEEEECCCCCCCCCCCCHHC IPLLGWLFKSSNTQKIKNELLIFITPKIVL CCCEEEEECCCCHHHHCCCEEEEEECEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7901733; 10984043 [H]