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The map label for this gene is spsL [H]

Identifier: 78222145

GI number: 78222145

Start: 1019669

End: 1020157

Strand: Direct

Name: spsL [H]

Synonym: Gmet_0925

Alternate gene names: 78222145

Gene position: 1019669-1020157 (Clockwise)

Preceding gene: 78222144

Following gene: 78222146

Centisome position: 25.51

GC content: 60.12

Gene sequence:

>489_bases
ATGCAAAACTTTCCTGAGTTCAAGAAAGGGAAGATTCACGATGTAGCGGTGCGCCCCTTGACGAAATTCCTCGACGAGCG
GGGGTGGCTCGCCGAACTGTTCCGCAGCGATGAAACCGATGCTGCCACCATGCCGGCCATGGCCTATCTCTCCATGACCC
AGCCGGGGGTAGCCCGGGGACCCCACGAGCACGTGGACCAGACCGACTGGTTCTGCTTTATCGGTCCCTCCAACTTCAAG
GTCTATCTCTGGGATGCCCGGCCCACCTCTGCCACTTTCGGGGTCAAGCAGACCATCTATGCCGGCATCGATGCCCCCCT
TGCCATGATTGTCCCTCCCGGCGTGGTCCACGCCTACAAGAACGTCGGCGGAGAGAACGGGATCGTTTTCAACGCGCCGA
ACCGTCTCTATGCCGGCGAAGGGAAGAAATCGCCGGTGGACGAGATCCGGCACGAAGAGGTGGAGGGGTCTCCCTTTACG
CTCGATTGA

Upstream 100 bases:

>100_bases
CGCAAGATGGCGGAGGTGATTGCCGCCACTCCCAACTCCTCGTACCGGGAATACCTGGTGCGGGTCCATAACGAAACAAA
CCTGTGCGGAGGGCATGACG

Downstream 100 bases:

>100_bases
TCAAGGACGTCACAGCCGTTGCCCTTGATCGGCGATATGCCGATCTACCCTCGAATCTTTCGGCCGAACGGACCGTTTGC
GGTTCCCGAGGCCAGAACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQNFPEFKKGKIHDVAVRPLTKFLDERGWLAELFRSDETDAATMPAMAYLSMTQPGVARGPHEHVDQTDWFCFIGPSNFK
VYLWDARPTSATFGVKQTIYAGIDAPLAMIVPPGVVHAYKNVGGENGIVFNAPNRLYAGEGKKSPVDEIRHEEVEGSPFT
LD

Sequences:

>Translated_162_residues
MQNFPEFKKGKIHDVAVRPLTKFLDERGWLAELFRSDETDAATMPAMAYLSMTQPGVARGPHEHVDQTDWFCFIGPSNFK
VYLWDARPTSATFGVKQTIYAGIDAPLAMIVPPGVVHAYKNVGGENGIVFNAPNRLYAGEGKKSPVDEIRHEEVEGSPFT
LD
>Mature_162_residues
MQNFPEFKKGKIHDVAVRPLTKFLDERGWLAELFRSDETDAATMPAMAYLSMTQPGVARGPHEHVDQTDWFCFIGPSNFK
VYLWDARPTSATFGVKQTIYAGIDAPLAMIVPPGVVHAYKNVGGENGIVFNAPNRLYAGEGKKSPVDEIRHEEVEGSPFT
LD

Specific function: Unknown

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To dTDP-4-dehydrorhamnose reductase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: NA

Molecular weight: Translated: 17984; Mature: 17984

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNFPEFKKGKIHDVAVRPLTKFLDERGWLAELFRSDETDAATMPAMAYLSMTQPGVARG
CCCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
PHEHVDQTDWFCFIGPSNFKVYLWDARPTSATFGVKQTIYAGIDAPLAMIVPPGVVHAYK
CHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHHH
NVGGENGIVFNAPNRLYAGEGKKSPVDEIRHEEVEGSPFTLD
HCCCCCCEEECCCCEEEECCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQNFPEFKKGKIHDVAVRPLTKFLDERGWLAELFRSDETDAATMPAMAYLSMTQPGVARG
CCCCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC
PHEHVDQTDWFCFIGPSNFKVYLWDARPTSATFGVKQTIYAGIDAPLAMIVPPGVVHAYK
CHHHCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEECCCHHHHHHH
NVGGENGIVFNAPNRLYAGEGKKSPVDEIRHEEVEGSPFTLD
HCCCCCCEEECCCCEEEECCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]