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The map label for this gene is yxkH [H]

Identifier: 78222117

GI number: 78222117

Start: 987859

End: 988653

Strand: Direct

Name: yxkH [H]

Synonym: Gmet_0897

Alternate gene names: 78222117

Gene position: 987859-988653 (Clockwise)

Preceding gene: 78222116

Following gene: 78222118

Centisome position: 24.71

GC content: 60.5

Gene sequence:

>795_bases
ATGAAAGTGCGCATCATCTTTGCCGTTCTGTTCGGCATGCTTTTCCCTGCCATCGTCTCGTCAAGCCTGCCCCCCCGTGA
ATTCAGCGTCCCCATTCTCCTCTATCACCGCTTCGGCCCCACGGTTGCCGACAGCATGACCATCAAGACCTCCGTATTCG
AGGAGCACCTGAAGTACCTCAGGGATAACGGCTACCGGGTGATCCCGCTGCGCCAGGTGGTGGATTTCTACCTGAAGAAT
GGGCCGGCGCCTCCGCCGAAATCGGTGGTCATCGTGGAGGATGACGCCCACAAGTCGGTCTACACCGACATGCTGCCGCT
GGCCAAAAAGTACCACGTGCCGGTGACGGTCTTCATCTACCCGTCGGCCGTTTCCAATGCCAAATACGCCATGACCTGGG
ACCAGCTCCGGGAGCTGAAGAAGACGGGACTCTTCGAGTTTCAGTCCCACACCTTCTGGCATCCCAATTTCAGGAAGGAT
CGGAAAAAGCTGAAACCGGCGGAGTTCGACAAGCTGGTGGAGACTCAACTGCGGAAATCGCGGGGTAGGATCGAGAAGGA
GCTGGGAGTGACGGTAGACATGCTCGCCTGGCCCTTCGGCATCTACGACGACGACCTGCTGCGCCGGGCTGGTGCCCTGG
GGTACCGGGCCACCTTCACCGTTGACCCGCACCCTGTCACCCAGGCCGACAGCGTGATGAAGCTCCCCCGGTTTCTGGTG
AGCAACGGCGACCAGGGGAAGGCCTTTGCCCAGCTTCTGGTCGGGCGTGGGGCCAAGCGAAGTGCCGCCTACTGA

Upstream 100 bases:

>100_bases
TAAACCGTCTTCCCGAAATTCTGTCTGTTGCAACAATCCTTCCGGCAGCTTTCTTGCTGCAACCACTCTAAACCATTAAC
CCCGGAGGTCTCTCAGTTTC

Downstream 100 bases:

>100_bases
GCCCCCGAAGAAGCATCCTTGTCCCGACTGCCGGTGCTGCCAGTGGTGCGGGGATGACCGCTGTTCGCTCTGTCTCAGGG
GGGGCAAAAAAGGGAAGAAG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKVRIIFAVLFGMLFPAIVSSSLPPREFSVPILLYHRFGPTVADSMTIKTSVFEEHLKYLRDNGYRVIPLRQVVDFYLKN
GPAPPPKSVVIVEDDAHKSVYTDMLPLAKKYHVPVTVFIYPSAVSNAKYAMTWDQLRELKKTGLFEFQSHTFWHPNFRKD
RKKLKPAEFDKLVETQLRKSRGRIEKELGVTVDMLAWPFGIYDDDLLRRAGALGYRATFTVDPHPVTQADSVMKLPRFLV
SNGDQGKAFAQLLVGRGAKRSAAY

Sequences:

>Translated_264_residues
MKVRIIFAVLFGMLFPAIVSSSLPPREFSVPILLYHRFGPTVADSMTIKTSVFEEHLKYLRDNGYRVIPLRQVVDFYLKN
GPAPPPKSVVIVEDDAHKSVYTDMLPLAKKYHVPVTVFIYPSAVSNAKYAMTWDQLRELKKTGLFEFQSHTFWHPNFRKD
RKKLKPAEFDKLVETQLRKSRGRIEKELGVTVDMLAWPFGIYDDDLLRRAGALGYRATFTVDPHPVTQADSVMKLPRFLV
SNGDQGKAFAQLLVGRGAKRSAAY
>Mature_264_residues
MKVRIIFAVLFGMLFPAIVSSSLPPREFSVPILLYHRFGPTVADSMTIKTSVFEEHLKYLRDNGYRVIPLRQVVDFYLKN
GPAPPPKSVVIVEDDAHKSVYTDMLPLAKKYHVPVTVFIYPSAVSNAKYAMTWDQLRELKKTGLFEFQSHTFWHPNFRKD
RKKLKPAEFDKLVETQLRKSRGRIEKELGVTVDMLAWPFGIYDDDLLRRAGALGYRATFTVDPHPVTQADSVMKLPRFLV
SNGDQGKAFAQLLVGRGAKRSAAY

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1787260, Length=256, Percent_Identity=23.4375, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786322, Length=219, Percent_Identity=25.5707762557078, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30093; Mature: 30093

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRIIFAVLFGMLFPAIVSSSLPPREFSVPILLYHRFGPTVADSMTIKTSVFEEHLKYL
CEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHH
RDNGYRVIPLRQVVDFYLKNGPAPPPKSVVIVEDDAHKSVYTDMLPLAKKYHVPVTVFIY
HHCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE
PSAVSNAKYAMTWDQLRELKKTGLFEFQSHTFWHPNFRKDRKKLKPAEFDKLVETQLRKS
CCCCCCCEEEECHHHHHHHHHCCCEEECCCCEECCCHHHHHHHCCCHHHHHHHHHHHHHH
RGRIEKELGVTVDMLAWPFGIYDDDLLRRAGALGYRATFTVDPHPVTQADSVMKLPRFLV
HCCHHHHHCCEEEHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
SNGDQGKAFAQLLVGRGAKRSAAY
CCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKVRIIFAVLFGMLFPAIVSSSLPPREFSVPILLYHRFGPTVADSMTIKTSVFEEHLKYL
CEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHH
RDNGYRVIPLRQVVDFYLKNGPAPPPKSVVIVEDDAHKSVYTDMLPLAKKYHVPVTVFIY
HHCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE
PSAVSNAKYAMTWDQLRELKKTGLFEFQSHTFWHPNFRKDRKKLKPAEFDKLVETQLRKS
CCCCCCCEEEECHHHHHHHHHCCCEEECCCCEECCCHHHHHHHCCCHHHHHHHHHHHHHH
RGRIEKELGVTVDMLAWPFGIYDDDLLRRAGALGYRATFTVDPHPVTQADSVMKLPRFLV
HCCHHHHHCCEEEHHHCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
SNGDQGKAFAQLLVGRGAKRSAAY
CCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]