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The map label for this gene is yggS [C]

Identifier: 78222116

GI number: 78222116

Start: 987066

End: 987761

Strand: Direct

Name: yggS [C]

Synonym: Gmet_0896

Alternate gene names: 78222116

Gene position: 987066-987761 (Clockwise)

Preceding gene: 78222115

Following gene: 78222117

Centisome position: 24.69

GC content: 66.38

Gene sequence:

>696_bases
ATGACGATTGCCTCGAACCTTATCCATCTCCAGGAACGCATCGCTACGGTGGCCCGTCGGGCCGGCCGCGACCCGGAATC
GGTGCGCCTCGTGGCGGTCTCCAAGACCAAGCCGGCCGAGGCGGTGGAGGATGCGGCCCGGGCGGGGCAGCGGCTCTTTG
GCGAGAACTACGTGCAGGAGTTCACTGCCAAGGCCGGCGAAGTGCGGGAGCCGGTGGAATGGCATTTCATCGGTGCCCTC
CAGAGCAACAAGGTGCGGCAGATTGCCGGCCTCGTGACCATGATCCACTCGGTGGACCGCCTCTCTCTGGCCCAGGAGAT
CGAGCGCCAGTGGGCAAAACTCGACACCACCTGTGACGTCCTCATCCAGGTGAACATCGCCGGCGAGGCGACCAAATCGG
GCACCACCGCCGGGGAACTCCTGACCCTTGTCAGGGAGGTGGCGCTCCTTCCCCACCTGCGGGTGCGGGGGCTCATGACC
ATGCCTCCTTTCTTCGACGATCCCGAGGGGGCGCGTCCCTACTTCCGCGAATTGAAACGGCTTGCCGGCGTCGTCGCCGC
CGCGGGCATCCCCGGCGTCGTCATGGATGAGCTCTCCATGGGGATGTCGGGGGATTTCGAGGCCGCCGTCGAGGAAGGGG
CCACGCTGGTCCGCATCGGCACCTCCCTTTTCGGCGAGCGGGAATACCGCCGGTAA

Upstream 100 bases:

>100_bases
TATGGTGGAGCGGATCGACGGCTCCTACACCAACGTGGTGGGGCTCCCCCTCTGCGAGGTGGTGGAGGATCTTCGTACCA
TGGGGGCTCTGTAAAGCGTC

Downstream 100 bases:

>100_bases
ACCGTCTTCCCGAAATTCTGTCTGTTGCAACAATCCTTCCGGCAGCTTTCTTGCTGCAACCACTCTAAACCATTAACCCC
GGAGGTCTCTCAGTTTCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MTIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQEFTAKAGEVREPVEWHFIGAL
QSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTCDVLIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMT
MPPFFDDPEGARPYFRELKRLAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYRR

Sequences:

>Translated_231_residues
MTIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQEFTAKAGEVREPVEWHFIGAL
QSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTCDVLIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMT
MPPFFDDPEGARPYFRELKRLAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYRR
>Mature_230_residues
TIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQEFTAKAGEVREPVEWHFIGALQ
SNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTCDVLIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMTM
PPFFDDPEGARPYFRELKRLAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYRR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=236, Percent_Identity=39.4067796610169, Blast_Score=148, Evalue=3e-36,
Organism=Escherichia coli, GI1789321, Length=236, Percent_Identity=44.9152542372881, Blast_Score=181, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=35.6846473029046, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=32.7014218009479, Blast_Score=109, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45550861, Length=245, Percent_Identity=40.4081632653061, Blast_Score=153, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25312; Mature: 25181

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQE
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
FTAKAGEVREPVEWHFIGALQSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTCDV
HHHHCCCCCCCCHHEEEECHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMTMPPFFDDPEGARPYFRELKR
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
LAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYRR
HHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEEEHHHHHCCHHCCC
>Mature Secondary Structure 
TIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQE
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
FTAKAGEVREPVEWHFIGALQSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTCDV
HHHHCCCCCCCCHHEEEECHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMTMPPFFDDPEGARPYFRELKR
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
LAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYRR
HHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCEEEEEHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]