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The map label for this gene is arnD [H]

Identifier: 78222102

GI number: 78222102

Start: 971379

End: 972305

Strand: Reverse

Name: arnD [H]

Synonym: Gmet_0882

Alternate gene names: 78222102

Gene position: 972305-971379 (Counterclockwise)

Preceding gene: 78222103

Following gene: 78222101

Centisome position: 24.32

GC content: 63.11

Gene sequence:

>927_bases
ATGCCCACCATAGCCCTCAAAATAGACGTCGACACGTACGTCGGCACCCGCGACGGGGTACCGCGGCTCTTGGAGATCTT
CGACCGCTTCGGGATCAAGGGAACGTTCTACTTCTCCATGGGGCCCGACAACAGCGGCAAGGCGATCCGCCGCATCTTCA
CCCGCAAGGGGTTCCTCCGGAAGATGCTTCGGACCAGGGCGCCGTCGGTCTACGGGCTGCGGACCCTCATGTACGGCGTG
CTCCTGCCGCCGCCGATCATTGCGGACAAGGTTCCCCACGTCCTGCGGGAGACCGAGGCCCGGGGGCACGAGGTCGGCAT
CCACTGCTGGGACCACGTCAAGTGGCACGACCTCCTTCCCTGGATCCCGCGAAACATGATCGCCCTGGAGCTGGGGCGGG
CCTTCGCCCTTTTCGAGGAGATCCTCAACAGGAGGGCCAAGACCACGGCGGCTCCGGGATGGACCGTCACTGCCGACTCC
CTGGAGATCCAGGATGCCCTCTACCTCACTTACTGCAGCGACAGCCGGGGGATCCACCCCTTCTACCCCGTGATGGACGA
CCGGCGTTTCCATACTCTCCAGATTCCGACTACCCTTCCCACTATGGACGAACTCTTGGGGGAGAACGGTATCACGGCGG
AAACCGTGAACGACCACTACCTCTCCCTGATCCAACCGGGGCTCAACGTTCACACCATCCATGCCGAACTGGAGGGGGGA
GTGCTGTCCCCCGTCTTTATCGACCTTCTGGAGCGGCTCCAGGCGAAGGGCTGCCGCTTTGTCACCCTTGCCGAAGCGGC
TGAAGAGGCCCATCGGGGAGAAATCCCCTGCTGCAGGCTGGCGATGGGAGAGCTTCTCGGCCGGGCCGGCGAAGTGGCAA
TCCAGGGGAAGATGACAAGAGAGCCGAGGAAGAAGATTCGGGATTGA

Upstream 100 bases:

>100_bases
ATCACCTTGTGCGGCGTAGCCCTGCTACGCCTCCGCGGGATCCCTCCTCCGCCTTGACCTTGCGAAAAATCGCCATTTTT
CATGATTGGTTCATGACCTG

Downstream 100 bases:

>100_bases
AAAGACGGCATACATGGACAAGGAAGGCGTACCGGAGTGTACGCCTTTTTTCATTTCTCCAGGGGAGGTCAGGATTTGCG
TCCACGTATCCCGTCGGGTA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MPTIALKIDVDTYVGTRDGVPRLLEIFDRFGIKGTFYFSMGPDNSGKAIRRIFTRKGFLRKMLRTRAPSVYGLRTLMYGV
LLPPPIIADKVPHVLRETEARGHEVGIHCWDHVKWHDLLPWIPRNMIALELGRAFALFEEILNRRAKTTAAPGWTVTADS
LEIQDALYLTYCSDSRGIHPFYPVMDDRRFHTLQIPTTLPTMDELLGENGITAETVNDHYLSLIQPGLNVHTIHAELEGG
VLSPVFIDLLERLQAKGCRFVTLAEAAEEAHRGEIPCCRLAMGELLGRAGEVAIQGKMTREPRKKIRD

Sequences:

>Translated_308_residues
MPTIALKIDVDTYVGTRDGVPRLLEIFDRFGIKGTFYFSMGPDNSGKAIRRIFTRKGFLRKMLRTRAPSVYGLRTLMYGV
LLPPPIIADKVPHVLRETEARGHEVGIHCWDHVKWHDLLPWIPRNMIALELGRAFALFEEILNRRAKTTAAPGWTVTADS
LEIQDALYLTYCSDSRGIHPFYPVMDDRRFHTLQIPTTLPTMDELLGENGITAETVNDHYLSLIQPGLNVHTIHAELEGG
VLSPVFIDLLERLQAKGCRFVTLAEAAEEAHRGEIPCCRLAMGELLGRAGEVAIQGKMTREPRKKIRD
>Mature_307_residues
PTIALKIDVDTYVGTRDGVPRLLEIFDRFGIKGTFYFSMGPDNSGKAIRRIFTRKGFLRKMLRTRAPSVYGLRTLMYGVL
LPPPIIADKVPHVLRETEARGHEVGIHCWDHVKWHDLLPWIPRNMIALELGRAFALFEEILNRRAKTTAAPGWTVTADSL
EIQDALYLTYCSDSRGIHPFYPVMDDRRFHTLQIPTTLPTMDELLGENGITAETVNDHYLSLIQPGLNVHTIHAELEGGV
LSPVFIDLLERLQAKGCRFVTLAEAAEEAHRGEIPCCRLAMGELLGRAGEVAIQGKMTREPRKKIRD

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=297, Percent_Identity=38.3838383838384, Blast_Score=200, Evalue=8e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 34751; Mature: 34620

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTIALKIDVDTYVGTRDGVPRLLEIFDRFGIKGTFYFSMGPDNSGKAIRRIFTRKGFLR
CCEEEEEEECHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
KMLRTRAPSVYGLRTLMYGVLLPPPIIADKVPHVLRETEARGHEVGIHCWDHVKWHDLLP
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCC
WIPRNMIALELGRAFALFEEILNRRAKTTAAPGWTVTADSLEIQDALYLTYCSDSRGIHP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEECCEEEEEEECCCCCCCC
FYPVMDDRRFHTLQIPTTLPTMDELLGENGITAETVNDHYLSLIQPGLNVHTIHAELEGG
CCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEECCCHHHHHHHCCCCCEEEEEEECCCC
VLSPVFIDLLERLQAKGCRFVTLAEAAEEAHRGEIPCCRLAMGELLGRAGEVAIQGKMTR
CCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCC
EPRKKIRD
CHHHHCCC
>Mature Secondary Structure 
PTIALKIDVDTYVGTRDGVPRLLEIFDRFGIKGTFYFSMGPDNSGKAIRRIFTRKGFLR
CEEEEEEECHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
KMLRTRAPSVYGLRTLMYGVLLPPPIIADKVPHVLRETEARGHEVGIHCWDHVKWHDLLP
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHCC
WIPRNMIALELGRAFALFEEILNRRAKTTAAPGWTVTADSLEIQDALYLTYCSDSRGIHP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEECCEEEEEEECCCCCCCC
FYPVMDDRRFHTLQIPTTLPTMDELLGENGITAETVNDHYLSLIQPGLNVHTIHAELEGG
CCCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEECCCHHHHHHHCCCCCEEEEEEECCCC
VLSPVFIDLLERLQAKGCRFVTLAEAAEEAHRGEIPCCRLAMGELLGRAGEVAIQGKMTR
CCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCC
EPRKKIRD
CHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA