| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is tyrC [H]
Identifier: 78222083
GI number: 78222083
Start: 952624
End: 953484
Strand: Direct
Name: tyrC [H]
Synonym: Gmet_0863
Alternate gene names: 78222083
Gene position: 952624-953484 (Clockwise)
Preceding gene: 78222082
Following gene: 78222084
Centisome position: 23.83
GC content: 61.44
Gene sequence:
>861_bases ATGCCCTTCATCCATAGATTAGCCATCATCGGCGTTGGCCTTATCGGCGGCTCCCTGGCCCGCATCCTGCGAGAGAAGGG GGCGGTGGGGGAGATTGTCGGAATCGGGCGCGGCGAAGCAAACCTGCGCAAGGCGGTGGAACTTGGGGTTATCGATCGGT ACTCCCTGGATTCCGTAGCCGGCGTCGAGGGTGCTGACGTCGTTTTCCTGGCCACGCCGGTCTGCTCCATTCCTTCCATA ACGGCCGAGATTGCCCCCCATCTGGCTCCCGGTTGCGTGGTGACCGACGGGGGGAGCGTGAAGGAAGAGATTGTTTCCGC CTGCGAACCCCTCATGCCGAACGGGATTCATTTCGTCGGCGGGCACCCCATCGCCGGCACCGAGCACTCGGGTGTGGAAG CGTCGTTTTCCTCCCTCTATGTGGGAAAGCGCTGCATCGTGACCCCTACCTCCCGTACCAGCCAGGATGCCCTTGCCAAG GTGGTGCGGATGTGGGAGGTCGCCGGTTCCGAAGTGGTCATCATGGATACGGAGAAGCACGACCGGGTGCTTGCGGCCAT TTCCCATCTCCCCCACATGGTTGCCTATGCTCTGGTGAATGCCGTTGAAGGGTACGACCGCTTCGAGGAGAGTATCCTTC GCTACTCCGCCGGCGGGTTCCGCGACTTTACCCGGATAGCCTCGTCGGACCCGGCCATGTGGCGGGACATCGCCCTCATG AATCGGGAAGCGGTCATCGAAATGATGGACCATTTTGCCGCATACTTTGCGAGACTCCGGGAGTTGGTGGCAGCGGCCGA CGCCCCTGGACTCGAACGCTTCTTCCGGGAATCGAAGGAAAGCAGAGACGCTATTCTGTAG
Upstream 100 bases:
>100_bases AGATCCGGTGGTGTCCGACGCGGTCCAGGAACTGAAGAACTACTGCCAGTTTGTCAAGATCCTCGGATCATACCCCCGGG CGAAATAGCCGTTGGATACA
Downstream 100 bases:
>100_bases GGAAGGCAGTTCCTAAATCTCAGCCAAGGTGGTTAATCGTGCAGAGCTATACCGTTCGGCCGGCCAAGGGGATTCGTGGC GAGATCACCGTTCCCGGCGA
Product: prephenate dehydrogenase
Products: NA
Alternate protein names: Arogenate dehydrogenase; ADH; Cyclohexadienyl dehydrogenase; Prephenate dehydrogenase; PDH [H]
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MPFIHRLAIIGVGLIGGSLARILREKGAVGEIVGIGRGEANLRKAVELGVIDRYSLDSVAGVEGADVVFLATPVCSIPSI TAEIAPHLAPGCVVTDGGSVKEEIVSACEPLMPNGIHFVGGHPIAGTEHSGVEASFSSLYVGKRCIVTPTSRTSQDALAK VVRMWEVAGSEVVIMDTEKHDRVLAAISHLPHMVAYALVNAVEGYDRFEESILRYSAGGFRDFTRIASSDPAMWRDIALM NREAVIEMMDHFAAYFARLRELVAAADAPGLERFFRESKESRDAIL
Sequences:
>Translated_286_residues MPFIHRLAIIGVGLIGGSLARILREKGAVGEIVGIGRGEANLRKAVELGVIDRYSLDSVAGVEGADVVFLATPVCSIPSI TAEIAPHLAPGCVVTDGGSVKEEIVSACEPLMPNGIHFVGGHPIAGTEHSGVEASFSSLYVGKRCIVTPTSRTSQDALAK VVRMWEVAGSEVVIMDTEKHDRVLAAISHLPHMVAYALVNAVEGYDRFEESILRYSAGGFRDFTRIASSDPAMWRDIALM NREAVIEMMDHFAAYFARLRELVAAADAPGLERFFRESKESRDAIL >Mature_285_residues PFIHRLAIIGVGLIGGSLARILREKGAVGEIVGIGRGEANLRKAVELGVIDRYSLDSVAGVEGADVVFLATPVCSIPSIT AEIAPHLAPGCVVTDGGSVKEEIVSACEPLMPNGIHFVGGHPIAGTEHSGVEASFSSLYVGKRCIVTPTSRTSQDALAKV VRMWEVAGSEVVIMDTEKHDRVLAAISHLPHMVAYALVNAVEGYDRFEESILRYSAGGFRDFTRIASSDPAMWRDIALMN REAVIEMMDHFAAYFARLRELVAAADAPGLERFFRESKESRDAIL
Specific function: Is competent to function as either prephenate dehydrogenase or as arogenate dehydrogenase [H]
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF02153 PDH [H]
EC number: =1.3.1.43; =1.3.1.12 [H]
Molecular weight: Translated: 30775; Mature: 30644
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFIHRLAIIGVGLIGGSLARILREKGAVGEIVGIGRGEANLRKAVELGVIDRYSLDSVA CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHC GVEGADVVFLATPVCSIPSITAEIAPHLAPGCVVTDGGSVKEEIVSACEPLMPNGIHFVG CCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEC GHPIAGTEHSGVEASFSSLYVGKRCIVTPTSRTSQDALAKVVRMWEVAGSEVVIMDTEKH CCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHH DRVLAAISHLPHMVAYALVNAVEGYDRFEESILRYSAGGFRDFTRIASSDPAMWRDIALM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH NREAVIEMMDHFAAYFARLRELVAAADAPGLERFFRESKESRDAIL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure PFIHRLAIIGVGLIGGSLARILREKGAVGEIVGIGRGEANLRKAVELGVIDRYSLDSVA CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHC GVEGADVVFLATPVCSIPSITAEIAPHLAPGCVVTDGGSVKEEIVSACEPLMPNGIHFVG CCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEC GHPIAGTEHSGVEASFSSLYVGKRCIVTPTSRTSQDALAKVVRMWEVAGSEVVIMDTEKH CCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHH DRVLAAISHLPHMVAYALVNAVEGYDRFEESILRYSAGGFRDFTRIASSDPAMWRDIALM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH NREAVIEMMDHFAAYFARLRELVAAADAPGLERFFRESKESRDAIL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7916685 [H]