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The map label for this gene is secD

Identifier: 78222074

GI number: 78222074

Start: 940320

End: 941921

Strand: Direct

Name: secD

Synonym: Gmet_0854

Alternate gene names: 78222074

Gene position: 940320-941921 (Clockwise)

Preceding gene: 78222073

Following gene: 78222075

Centisome position: 23.52

GC content: 61.17

Gene sequence:

>1602_bases
ATGTCAAAGGGGCTTACCTGGCGCTTTGGCCTTATCCTGCTGTTCATTTTTCTGTCGGGTATCTACCTGACCCCGACCTT
TGTGTCTCCCCTTCCGTCGTGGTGGAAAGGGCTTCTTCCCAAGGACCGGATCAACCTGGGGCTTGACCTTCAGGGGGGGA
CACACCTGGTGATGGAGGTGGAGATCCAGAAGGCGGTGGAGGGCGCCCTCGACCTCATCGCGAGCGATCTGGAAGACAGC
CTTTCCGCCAAGACCATCCGGTTCAAGAAGATCGGGCGGATCGCATCGGATCGGATCCAGCTCACGTTCTACGACCGGGG
CACCGCCGACACGGTGCAGAAGATGGTCAAGGAGAAATATCCGACCCTGGAGCTCGTCCCTCCCTATGACGAGGGGGGAT
TCGTCAGCATGCAGCTCCGCATGGGTGAGAAGGAAGCCCAGGAGCGCAAGGACCGGGCCGTTGCCCAGGCACTTGAGACG
ATCCGCAACCGGATAGACCAGTTCGGCGTTTCCGAGCCGGTCATTGCCCGGGAAGGGCTCACCCATATCGTGGTCCAGCT
TCCGGGCATAAAAGACCCGAAGCGGGCCATCGAGCTCATCGGCCGGACGGCCCGGCTGGAGTTCAAGCTGGTTGACGAGA
CGGTCAATCCGGCCACGGCAACTCCCGGCACCATCCCCGAAGACTCCGAGCTCCTCATGGAGAAGAAGACCGACCCCACC
ACCGGCGCCGTAACCGAAATACCCCTGGTGGTCAAGAAAAAGGCGATGATTACCGGTGATCTCCTCACCAACGCCCAGGT
CCGGATCGATTCCCAGTTCAACCAGCCCTACGTGGCGATCGAGTTCAACTCCACCGGCGCCCGCCTCTTCGACCAGGTAA
CCGCCGCCAACGTGGGGAAACGTTTCGCCATTGTGCTCGATAACAATATCTACTCCGCGCCGGTGATCCGGGAGCGGATT
TCGGGTGGCAGCGCCCAAATCTCCGGCTCGTTCTCCGAGAAAGAGGCCGCTGACCTGGCCATCGTACTCCGGGCGGGATC
TCTCCCCGCACCGGTCAAGGTGATCCAGAACGAGACGGTTGGTCCTTCCCTGGGGCAGGACTCCATCACCAAGGGGCTGA
TGGCCGGTCTCGTGGGGGTGGCGCTCGTCGTTGTCTTCATGGCGATATACTATAAGCTCGCCGGCCTGGTGGCCAACTTC
GGCATGGTGCTCAACGTGCTCTACCTCATGGGCGCCCTGGCGGCCCTAGGAGCGACCCTGACCCTGCCGGGCATCGCCGC
CATCGTCCTGCTGATCGGCATGTCCGTTGACTCCAACGTCCTCATCTTCGAACGGATCCGGGAGGAGATGCGGCTCGGCA
AACCTCCCAAAGCGGCATTGGATGCCGGCTATGACAAGGCGTTCCTGACCATCATGGACTCCCACGTGACGACGCTCATC
ACGGCCGCCGTCCTCTTCCAGTTCGGCACCGGACCGGTCAAGGGATTTGCCGTGTCGTTGAGCCTGGGGATTATCATCAA
CCTGTTCACCGCTCTCGTGGGCACCAAGTCAATTTTCGACTTCGCCCTTTCGCGCCTGCGGATCAAGCGTCTGAGCATCT
AG

Upstream 100 bases:

>100_bases
CTCGAAATTGCCTCGGGGGTCACCATCAAGATTTCCAAGGGTTATATCGCCACCCTGAAGAAGGATTAGAACCTACGGGG
ATCTGAAAGGAGCTTCGCGC

Downstream 100 bases:

>100_bases
GGGGAGTCCATGGAATTTATCGGCAAGACACATATCGATTTTATGGGGATGAAGAAGTTTTCCTTCGCCATTTCCATTGT
CATAGCGATTCTCGGCATTA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MSKGLTWRFGLILLFIFLSGIYLTPTFVSPLPSWWKGLLPKDRINLGLDLQGGTHLVMEVEIQKAVEGALDLIASDLEDS
LSAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKYPTLELVPPYDEGGFVSMQLRMGEKEAQERKDRAVAQALET
IRNRIDQFGVSEPVIAREGLTHIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTDPT
TGAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGKRFAIVLDNNIYSAPVIRERI
SGGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNETVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANF
GMVLNVLYLMGALAALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTTLI
TAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI

Sequences:

>Translated_533_residues
MSKGLTWRFGLILLFIFLSGIYLTPTFVSPLPSWWKGLLPKDRINLGLDLQGGTHLVMEVEIQKAVEGALDLIASDLEDS
LSAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKYPTLELVPPYDEGGFVSMQLRMGEKEAQERKDRAVAQALET
IRNRIDQFGVSEPVIAREGLTHIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTDPT
TGAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGKRFAIVLDNNIYSAPVIRERI
SGGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNETVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANF
GMVLNVLYLMGALAALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTTLI
TAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI
>Mature_532_residues
SKGLTWRFGLILLFIFLSGIYLTPTFVSPLPSWWKGLLPKDRINLGLDLQGGTHLVMEVEIQKAVEGALDLIASDLEDSL
SAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKYPTLELVPPYDEGGFVSMQLRMGEKEAQERKDRAVAQALETI
RNRIDQFGVSEPVIAREGLTHIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTDPTT
GAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGKRFAIVLDNNIYSAPVIRERIS
GGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNETVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANFG
MVLNVLYLMGALAALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTTLIT
AAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=538, Percent_Identity=35.5018587360595, Blast_Score=328, Evalue=6e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57806; Mature: 57674

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGLTWRFGLILLFIFLSGIYLTPTFVSPLPSWWKGLLPKDRINLGLDLQGGTHLVMEV
CCCCCHHHHHHHHHHHHHCCHHCCCHHHCCCHHHHHCCCCCCCCCEEEEECCCCEEEEEE
EIQKAVEGALDLIASDLEDSLSAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKY
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEECCCCHHHHHHHHHHHC
PTLELVPPYDEGGFVSMQLRMGEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIAREGL
CCEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
THIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTDPT
CEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCC
TGAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGK
CCCHHHCCHHHHHHHHEEHHHHCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCC
RFAIVLDNNIYSAPVIRERISGGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNETV
EEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCHHHCCEEEEEECCCCCCCHHHHCCCCC
GPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANFGMVLNVLYLMGALAALGATL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTTLI
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
TAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI
HHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKGLTWRFGLILLFIFLSGIYLTPTFVSPLPSWWKGLLPKDRINLGLDLQGGTHLVMEV
CCCCHHHHHHHHHHHHHCCHHCCCHHHCCCHHHHHCCCCCCCCCEEEEECCCCEEEEEE
EIQKAVEGALDLIASDLEDSLSAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKY
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEECCCCHHHHHHHHHHHC
PTLELVPPYDEGGFVSMQLRMGEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIAREGL
CCEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
THIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTDPT
CEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCC
TGAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANVGK
CCCHHHCCHHHHHHHHEEHHHHCCCEEEEECCCCCCEEEEEECCCCHHHHHHHHHHCCCC
RFAIVLDNNIYSAPVIRERISGGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNETV
EEEEEEECCCCCCHHHHHHHCCCCEEECCCCCCHHHCCEEEEEECCCCCCCHHHHCCCCC
GPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANFGMVLNVLYLMGALAALGATL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTTLI
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHH
TAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI
HHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA