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The map label for this gene is ybbK [C]

Identifier: 78222034

GI number: 78222034

Start: 897120

End: 897893

Strand: Direct

Name: ybbK [C]

Synonym: Gmet_0814

Alternate gene names: 78222034

Gene position: 897120-897893 (Clockwise)

Preceding gene: 78222033

Following gene: 78222036

Centisome position: 22.44

GC content: 62.4

Gene sequence:

>774_bases
ATGTTCGACATCTTCAACTACGTGCCGGTGGTGTTCATCCTCATCCTGCTGATCATGTTCGCGGCCAGTGCCATCCGAGT
CCTTCCCGAGTACGAGCGGGGGGTTCTCTTTCGGCTCGGGCGCCTGGCGGGCGTTCGGGGTCCGGGGCTCTTCTTCATCA
TCCCGGGAATCGACAAACTGATTCGGGTGTCACTGCGGATCGTGGCCCTGGATGTCCCCCCCCAGGATGTGATCACCCAT
GACAACGTGACGGTGAAGGTGTCGGCGGTCATCTGTTTTCGGGTCATGGAGCCCCAGAAGGCCATCGTGGAGGTGGAGAA
CTACCTCTACGCCACGAGCCAGCTGGCCCAGACCACCCTGCGGAGCGTCCTGGGGCAGGTGGAGCTGGACGAGCTGCTGG
CCAACCGGGAGAAGATCAACAAGGAGCTCCAGGAGATCCTCGACCGGCACACGGGGCCGTGGGGGGTGAAGGTGACCGCC
GTGGAGGTGAAGAACATCGACCTTCCGCAGGAGATGCTCCGGGCCATTGCCAAGCAGGCCGAGGCGGAGCGGGAGCGGCG
CGCCAAGGTCATCCATGCCGACGGCGAATTTCAGGCGTCGGAGAAGCTGGCCCAAGCGGCGAAGGTTCTGGCCGCCGAAC
CCACGTCGCTGCAGCTGCGCTACCTCCAGACCCTGACCGAGATCGCGGCGGAAAAGAATTCCACCACCATCTTCCCGATA
CCGATCGACCTCATCAAGATGTTCCTGGAAAAGATGGGAGACAGGAACGGGTAA

Upstream 100 bases:

>100_bases
CCATGTGATGCTGTCATTATTGCGTAATTCCGTCCCTTGATCTTGATTTCGATTTTTGCCGGTCCCCGGTCCCGGGTCCC
GGCCTCAACAGGAGGCTTCC

Downstream 100 bases:

>100_bases
GCTGTCGAGGGCGGAAAGGAAAAGGCCGCGTCCGGATCGTCCGGCGCGGCCTTTTCTGTTTTCTGGGAAGAGTTGCGGTT
ACTTGGAGAGGATCTCGACC

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MFDIFNYVPVVFILILLIMFAASAIRVLPEYERGVLFRLGRLAGVRGPGLFFIIPGIDKLIRVSLRIVALDVPPQDVITH
DNVTVKVSAVICFRVMEPQKAIVEVENYLYATSQLAQTTLRSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTA
VEVKNIDLPQEMLRAIAKQAEAERERRAKVIHADGEFQASEKLAQAAKVLAAEPTSLQLRYLQTLTEIAAEKNSTTIFPI
PIDLIKMFLEKMGDRNG

Sequences:

>Translated_257_residues
MFDIFNYVPVVFILILLIMFAASAIRVLPEYERGVLFRLGRLAGVRGPGLFFIIPGIDKLIRVSLRIVALDVPPQDVITH
DNVTVKVSAVICFRVMEPQKAIVEVENYLYATSQLAQTTLRSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTA
VEVKNIDLPQEMLRAIAKQAEAERERRAKVIHADGEFQASEKLAQAAKVLAAEPTSLQLRYLQTLTEIAAEKNSTTIFPI
PIDLIKMFLEKMGDRNG
>Mature_257_residues
MFDIFNYVPVVFILILLIMFAASAIRVLPEYERGVLFRLGRLAGVRGPGLFFIIPGIDKLIRVSLRIVALDVPPQDVITH
DNVTVKVSAVICFRVMEPQKAIVEVENYLYATSQLAQTTLRSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTA
VEVKNIDLPQEMLRAIAKQAEAERERRAKVIHADGEFQASEKLAQAAKVLAAEPTSLQLRYLQTLTEIAAEKNSTTIFPI
PIDLIKMFLEKMGDRNG

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=247, Percent_Identity=47.7732793522267, Blast_Score=215, Evalue=3e-56,
Organism=Homo sapiens, GI221316744, Length=238, Percent_Identity=44.5378151260504, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI21686995, Length=238, Percent_Identity=44.5378151260504, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI7657615, Length=244, Percent_Identity=34.0163934426229, Blast_Score=148, Evalue=4e-36,
Organism=Homo sapiens, GI7305503, Length=190, Percent_Identity=35.7894736842105, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI20149563, Length=154, Percent_Identity=33.7662337662338, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI38016907, Length=58, Percent_Identity=60.3448275862069, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1786697, Length=194, Percent_Identity=35.0515463917526, Blast_Score=136, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI71987612, Length=250, Percent_Identity=50.4, Blast_Score=229, Evalue=1e-60,
Organism=Caenorhabditis elegans, GI25153583, Length=250, Percent_Identity=50.4, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI71987621, Length=250, Percent_Identity=50.4, Blast_Score=227, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI17569499, Length=250, Percent_Identity=48.8, Blast_Score=221, Evalue=3e-58,
Organism=Caenorhabditis elegans, GI17570459, Length=255, Percent_Identity=43.5294117647059, Blast_Score=214, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI193210507, Length=254, Percent_Identity=48.8188976377953, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17570161, Length=254, Percent_Identity=48.8188976377953, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17569493, Length=246, Percent_Identity=44.7154471544715, Blast_Score=210, Evalue=6e-55,
Organism=Caenorhabditis elegans, GI193209764, Length=246, Percent_Identity=44.7154471544715, Blast_Score=209, Evalue=9e-55,
Organism=Caenorhabditis elegans, GI71989948, Length=235, Percent_Identity=46.8085106382979, Blast_Score=206, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI17569497, Length=254, Percent_Identity=42.9133858267717, Blast_Score=204, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI32566490, Length=230, Percent_Identity=46.9565217391304, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=48.8888888888889, Blast_Score=158, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI32564147, Length=196, Percent_Identity=34.1836734693878, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI71989963, Length=118, Percent_Identity=49.1525423728814, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17542664, Length=168, Percent_Identity=27.9761904761905, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI45556022, Length=245, Percent_Identity=51.4285714285714, Blast_Score=234, Evalue=4e-62,
Organism=Drosophila melanogaster, GI18860517, Length=256, Percent_Identity=47.265625, Blast_Score=218, Evalue=2e-57,
Organism=Drosophila melanogaster, GI281365664, Length=249, Percent_Identity=50.2008032128514, Blast_Score=215, Evalue=2e-56,
Organism=Drosophila melanogaster, GI62484448, Length=249, Percent_Identity=50.2008032128514, Blast_Score=215, Evalue=3e-56,
Organism=Drosophila melanogaster, GI24657857, Length=249, Percent_Identity=50.2008032128514, Blast_Score=214, Evalue=5e-56,
Organism=Drosophila melanogaster, GI62484274, Length=249, Percent_Identity=50.2008032128514, Blast_Score=214, Evalue=5e-56,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=40.8333333333333, Blast_Score=194, Evalue=5e-50,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=40.8333333333333, Blast_Score=194, Evalue=5e-50,
Organism=Drosophila melanogaster, GI21356845, Length=244, Percent_Identity=37.2950819672131, Blast_Score=186, Evalue=2e-47,
Organism=Drosophila melanogaster, GI28573263, Length=243, Percent_Identity=38.2716049382716, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=39.4594594594595, Blast_Score=145, Evalue=2e-35,
Organism=Drosophila melanogaster, GI45550506, Length=202, Percent_Identity=34.6534653465347, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28831; Mature: 28831

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIFNYVPVVFILILLIMFAASAIRVLPEYERGVLFRLGRLAGVRGPGLFFIIPGIDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH
IRVSLRIVALDVPPQDVITHDNVTVKVSAVICFRVMEPQKAIVEVENYLYATSQLAQTTL
HHHHHHEEEEECCCHHHEECCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTAVEVKNIDLPQEMLRAIAKQA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
EAERERRAKVIHADGEFQASEKLAQAAKVLAAEPTSLQLRYLQTLTEIAAEKNSTTIFPI
HHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
PIDLIKMFLEKMGDRNG
CHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFDIFNYVPVVFILILLIMFAASAIRVLPEYERGVLFRLGRLAGVRGPGLFFIIPGIDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHH
IRVSLRIVALDVPPQDVITHDNVTVKVSAVICFRVMEPQKAIVEVENYLYATSQLAQTTL
HHHHHHEEEEECCCHHHEECCCEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RSVLGQVELDELLANREKINKELQEILDRHTGPWGVKVTAVEVKNIDLPQEMLRAIAKQA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHH
EAERERRAKVIHADGEFQASEKLAQAAKVLAAEPTSLQLRYLQTLTEIAAEKNSTTIFPI
HHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEC
PIDLIKMFLEKMGDRNG
CHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]