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The map label for this gene is yqeZ [H]

Identifier: 78222033

GI number: 78222033

Start: 895706

End: 897046

Strand: Direct

Name: yqeZ [H]

Synonym: Gmet_0813

Alternate gene names: 78222033

Gene position: 895706-897046 (Clockwise)

Preceding gene: 78222031

Following gene: 78222034

Centisome position: 22.41

GC content: 64.35

Gene sequence:

>1341_bases
ATGCATCGGATAATTACGCTCTGTATCCTCTTGTGCTGTCTACTGCCAGCCGTCGCCCTCCCTGCCGATTCGGCGACGGT
GCGGGTGCTGGGCGTTCGCTCGGCCATCAATCCCGTCACTGCTTCGTTTCTCAAGCGGAACCTTGTCGACGCCGCCCGCA
GGGGAGATCGCCTCGTCCTCATCGACATGGATACCCCGGGCGGCCTCGATACTGCCATGCGGGAGATCGTGAAGGATATC
CTCGCGAGCCCGGTGCCGGTGGCGGTCCACGTGGCCCCGTCGGGGGCGCGGGCCGCATCGGCCGGCGCCATTATCTGCCT
AGCGGCCGACATCTGCGCCATGGCACCCGGAACCACTATCGGCGCGGCCCATCCCGTTTCCATCGGCGAGAAGCAGGACA
AGGTCATGGAAGAGAAGGTGGTGAACGATGCCGAGGCCTACGCCGAGGGGCTCGCGAACCGGCGGGGGAGAAACGCCGCC
GTGGCGCGGCGGATGGTGCGGGAGAGCCTGTCGCTCTCCGCTGAGAAGGCTCTTGCAGAGAAGGTGGTAGATCTGATCGC
CGCCGACCGTGCCTCGCTCCTGGCTCAACTGGAGGGGCGTCGGGTGGCTCGCCCCGGCGGAGACGTGGTCCTCGGGCTTG
CCGGCGCCGTTGTCAGGGAGGAGCCGATGACGGCGCGGGAGCGGATTCTCGATGTCATCGGCAATCCCAACGTGGCCTAC
ATCCTGATGATGCTCGGGTTCCTCGGGATCTTTTTCGAACTCTCCAATCCTGGGGTGATCCTTCCCGGGGTGATCGGCGG
CATCTCCCTCATCCTCGCCTTCTTTGCCTTTCAGACCCTGCCGGTGAACTACGCCGGCGTGCTCCTGATCCTGCTCGCGC
TCATCCTGTTCATCGCCGAGATCAAGATCGTTTCCCACGGAATGCTGACGGTCGGAGGGGTCATCGCCATGGTACTCGGG
TCGCTGTTGCTGTTCGAATCACCAGAGCCCTATCTCCGGGTGTCGTGGCAGGTCATTGCCATAACGGTGATCGCCATCTC
CGCCTTTTCCGTCTTTGCCGTCACCATGGCGGTCAGGGTCCACCGCCGCAAGCCCACCACCGGCGGCGAGGGGCTCCTGG
GGGAGAGCGGCAAGGCCCTTTCCGCCATCTCTCCCGAGGGGAGGGTCTTCATCCACGGCGAGTACTGGGACGCCTGGAGC
GACGAGCCCCTGGCCGAGGGGGACAGGGTGACGGTAGTGGCGGTTGAGGGGATGCGGGTTAAGGTCAGAAAGACCGGTGA
TCGGGGACCGGGAAAGGCCTTTAGGCAAGGACTGCCATGTGATGCTGTCATTATTGCGTAA

Upstream 100 bases:

>100_bases
GCCTCCCGTGAGCAGGTTTGATACATAGCACCAATGGGTCGCCCTTGGCAAGCCTCCCGTCACGTTGACTGCCGCGCCGC
GCCGGGTATACTGTGAGCGT

Downstream 100 bases:

>100_bases
TTCCGTCCCTTGATCTTGATTTCGATTTTTGCCGGTCCCCGGTCCCGGGTCCCGGCCTCAACAGGAGGCTTCCATGTTCG
ACATCTTCAACTACGTGCCG

Product: nodulation efficiency protein NfeD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MHRIITLCILLCCLLPAVALPADSATVRVLGVRSAINPVTASFLKRNLVDAARRGDRLVLIDMDTPGGLDTAMREIVKDI
LASPVPVAVHVAPSGARAASAGAIICLAADICAMAPGTTIGAAHPVSIGEKQDKVMEEKVVNDAEAYAEGLANRRGRNAA
VARRMVRESLSLSAEKALAEKVVDLIAADRASLLAQLEGRRVARPGGDVVLGLAGAVVREEPMTARERILDVIGNPNVAY
ILMMLGFLGIFFELSNPGVILPGVIGGISLILAFFAFQTLPVNYAGVLLILLALILFIAEIKIVSHGMLTVGGVIAMVLG
SLLLFESPEPYLRVSWQVIAITVIAISAFSVFAVTMAVRVHRRKPTTGGEGLLGESGKALSAISPEGRVFIHGEYWDAWS
DEPLAEGDRVTVVAVEGMRVKVRKTGDRGPGKAFRQGLPCDAVIIA

Sequences:

>Translated_446_residues
MHRIITLCILLCCLLPAVALPADSATVRVLGVRSAINPVTASFLKRNLVDAARRGDRLVLIDMDTPGGLDTAMREIVKDI
LASPVPVAVHVAPSGARAASAGAIICLAADICAMAPGTTIGAAHPVSIGEKQDKVMEEKVVNDAEAYAEGLANRRGRNAA
VARRMVRESLSLSAEKALAEKVVDLIAADRASLLAQLEGRRVARPGGDVVLGLAGAVVREEPMTARERILDVIGNPNVAY
ILMMLGFLGIFFELSNPGVILPGVIGGISLILAFFAFQTLPVNYAGVLLILLALILFIAEIKIVSHGMLTVGGVIAMVLG
SLLLFESPEPYLRVSWQVIAITVIAISAFSVFAVTMAVRVHRRKPTTGGEGLLGESGKALSAISPEGRVFIHGEYWDAWS
DEPLAEGDRVTVVAVEGMRVKVRKTGDRGPGKAFRQGLPCDAVIIA
>Mature_446_residues
MHRIITLCILLCCLLPAVALPADSATVRVLGVRSAINPVTASFLKRNLVDAARRGDRLVLIDMDTPGGLDTAMREIVKDI
LASPVPVAVHVAPSGARAASAGAIICLAADICAMAPGTTIGAAHPVSIGEKQDKVMEEKVVNDAEAYAEGLANRRGRNAA
VARRMVRESLSLSAEKALAEKVVDLIAADRASLLAQLEGRRVARPGGDVVLGLAGAVVREEPMTARERILDVIGNPNVAY
ILMMLGFLGIFFELSNPGVILPGVIGGISLILAFFAFQTLPVNYAGVLLILLALILFIAEIKIVSHGMLTVGGVIAMVLG
SLLLFESPEPYLRVSWQVIAITVIAISAFSVFAVTMAVRVHRRKPTTGGEGLLGESGKALSAISPEGRVFIHGEYWDAWS
DEPLAEGDRVTVVAVEGMRVKVRKTGDRGPGKAFRQGLPCDAVIIA

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002810
- InterPro:   IPR002825 [H]

Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 47078; Mature: 47078

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIITLCILLCCLLPAVALPADSATVRVLGVRSAINPVTASFLKRNLVDAARRGDRLVL
CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
IDMDTPGGLDTAMREIVKDILASPVPVAVHVAPSGARAASAGAIICLAADICAMAPGTTI
EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCC
GAAHPVSIGEKQDKVMEEKVVNDAEAYAEGLANRRGRNAAVARRMVRESLSLSAEKALAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
KVVDLIAADRASLLAQLEGRRVARPGGDVVLGLAGAVVREEPMTARERILDVIGNPNVAY
HHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHCCCCHHH
ILMMLGFLGIFFELSNPGVILPGVIGGISLILAFFAFQTLPVNYAGVLLILLALILFIAE
HHHHHHHHHHHEECCCCCEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IKIVSHGMLTVGGVIAMVLGSLLLFESPEPYLRVSWQVIAITVIAISAFSVFAVTMAVRV
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
HRRKPTTGGEGLLGESGKALSAISPEGRVFIHGEYWDAWSDEPLAEGDRVTVVAVEGMRV
HCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEE
KVRKTGDRGPGKAFRQGLPCDAVIIA
EEEECCCCCCCHHHHCCCCCCEEEEC
>Mature Secondary Structure
MHRIITLCILLCCLLPAVALPADSATVRVLGVRSAINPVTASFLKRNLVDAARRGDRLVL
CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
IDMDTPGGLDTAMREIVKDILASPVPVAVHVAPSGARAASAGAIICLAADICAMAPGTTI
EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHCCCCCCC
GAAHPVSIGEKQDKVMEEKVVNDAEAYAEGLANRRGRNAAVARRMVRESLSLSAEKALAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
KVVDLIAADRASLLAQLEGRRVARPGGDVVLGLAGAVVREEPMTARERILDVIGNPNVAY
HHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHCCCCHHH
ILMMLGFLGIFFELSNPGVILPGVIGGISLILAFFAFQTLPVNYAGVLLILLALILFIAE
HHHHHHHHHHHEECCCCCEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IKIVSHGMLTVGGVIAMVLGSLLLFESPEPYLRVSWQVIAITVIAISAFSVFAVTMAVRV
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
HRRKPTTGGEGLLGESGKALSAISPEGRVFIHGEYWDAWSDEPLAEGDRVTVVAVEGMRV
HCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEE
KVRKTGDRGPGKAFRQGLPCDAVIIA
EEEECCCCCCCHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]