| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is 78221821
Identifier: 78221821
GI number: 78221821
Start: 669424
End: 671562
Strand: Direct
Name: 78221821
Synonym: Gmet_0600
Alternate gene names: NA
Gene position: 669424-671562 (Clockwise)
Preceding gene: 304570575
Following gene: 78221822
Centisome position: 16.75
GC content: 61.01
Gene sequence:
>2139_bases ATGAAGACTGAAGATGGCTCTGAAAGGGGGCGCCTGACCGTTTTTGCGCTGCTGGCACTGTTCCTGTTCGTGCCGATTAT GCAGCCCGAGGCCCATGCGCTTGTTGAGAACAATTGCAGGGGGTGTCATAACGATGCGCAGGGGAAAACCGCGGACCGGC ACCATGCGCTGCTCAGTCTAGGAAAGCAATGTCTTGACTGCCACCAGATGGTTGGTCCGTCCGGAAGTCAGACTCCTGTT GTGGTTCGCGATTGCATTGCATGTCATGGCGACCTGATTCACCAGGGACGACACCATCAACTGATCGCTGAGCGCGGTAA ACAATGCCTTGACTGTCACCAGATAGTTGTGGACGCTTCCGGCGCCAATACGCCCGTTGTGGTCCGGGACTGCAGTGTCT GTCATGCGACCATGAACCCCAAGACCAATCACAATAATGCCATGGCCGATGTCAGTTGCGCCCAGTGCCATAACCTTGGT GTGGTGAACGAGCATCTTTCCCGCACGTCCACCTGCTATACCTGTCACAGCAGCGTTAATGTCACGGTGCAACAGACTAT ACTTTCCGCAAAGACAGGGGTCGTGGTCACCTGTACTTCCTGCCACGTTGGTTTTGATCACGTAGCCCAGCACAACATGG TGGTAACGCCTGCGGACTGCGCAGGGTGCCACACTCAGGGAGTGGTTTACGAGCACACGAACCGGACCTCCACCTGCGCC ACCTGCCACCAGAGCACCAACGCCACCGTTCAGAAAACGATCACCGACGGTCGGAACAATATCCAGGTATCCTGCGCCAA CTGCCACGGCACGGTGAACCACATTGCCCAGCACGACATGGCCCAGACCGCGGCCGAGTGCGCCCAGTGCCACACCAAGA GTGTCCTTGACGAGCACCTGACCCGGACTTCCACCTGCGCCACCTGCCACTCCAGCTCCCGGGTTGAAGTCCAGAACGCC ATCACCGCCGGCCGTGCCGGCACGGTGGTCAACTGCGTCACCTGCCACGGCCAGTACAACCATCCCACGGCCCACACCGG CAAGGTCAGCGCTCCCTACGCCGACTGCAACACCTGCCACATCACCAACCTGACCGACCTGCACGCCCAGCGGGGCTTCC AGTGCGCCGCCTGCCACGCCAGCACCAACACGGCCATAACCGCGGCTGTTCAGAAAGGTCTCGGTGGCCAACCGGTTGTC TGTGCCGACTGCCACAACGCCATCGGCGGCTTCGGCAACCATGCGAAGCAGCACGACATGGTCACCCTCAACAGCACCAC CGGCTTCATCGCCGCCCATGAAGAGAAAATGGTTTACTGCTTCACCTGTCACAACAACACTAACGCCGGCTACCAGAAAG CCATCAACGATGGCATGGCCGGCATACCGCAGACCTGCACCTCCTGCCACGCCGCTTACGGCAACCAGCCTCCGGTGGCC AACGCCGGCGCCAATGTGACCACCACCGTCAACAAGGCAGTGACCCTCTCCGGGGCCGCTTCCAGCGACCCGGACGGCAC CATCGTATCGTACGCCTGGACCTTCGGCGACGGCACCACCGGCAGTGGCGTCTCCGTCACCAAGACCTACGCCACGGCCG GCACCTACACCGTGACCCTGACCGTCACCGACAACGCCGGCGCCAGCGCCAGCGCCACCACCATCGTCACCGTCCAGGCG GCCCCGACCAGCAGCTCGGTCTTTGCCGACCAGGTTCTGTCCATGCAGCGGCTCTACTCCGTCACCTCCTCGGACAGCAA CAGCAGCGACGTCACCGCCAACTTCCGCGACGGCAACACTACCGACCGCTACCTGCTGCAGTATGGCAGCAGCGGCAGCA ACTACGTCATCGCCATGAAACTGAACCGCGATGCCCTGACCGCCACCAAGGTGGTGCTGCGGGTGTATGTCTCCTCCATC AGTTCCTCGCGGACCTTGAGGATCTACCCGTACCAGTCCAACGGAACCTCGGTGAACACCCGCTACTACACGAGCTACAG CACGAGCAGCACCGGGTGGAAGGATATCGACGTCACTTCCATCGCCCAGCAGATGAACGGCTACGGCTGGATGAAGTTCC GTGTCACCCCCACTTCGAACAGCCTCTACGTTGCCGAGGGTGCCTTCCAGGTACAGTAA
Upstream 100 bases:
>100_bases TGTGTCACAAATAACTAATATTCGTTAATCAATGGTTGGGGCTTGATTCTTCTCGTTGGTCGTGTAAAAGGCTGTGTCAC GGAGTTGAAAGGGGAAAAAG
Downstream 100 bases:
>100_bases CGTAGTGAGACTAATCAGAGTCCAGGAACTGAAAGGAGAAACGAAATGAAGCGCATCGGGATCACATTCATCGCGCTCCT CGCTTTGGCCGCTCCGGCCA
Product: PKD
Products: NA
Alternate protein names: API; Lysyl endopeptidase; Protease I [H]
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MKTEDGSERGRLTVFALLALFLFVPIMQPEAHALVENNCRGCHNDAQGKTADRHHALLSLGKQCLDCHQMVGPSGSQTPV VVRDCIACHGDLIHQGRHHQLIAERGKQCLDCHQIVVDASGANTPVVVRDCSVCHATMNPKTNHNNAMADVSCAQCHNLG VVNEHLSRTSTCYTCHSSVNVTVQQTILSAKTGVVVTCTSCHVGFDHVAQHNMVVTPADCAGCHTQGVVYEHTNRTSTCA TCHQSTNATVQKTITDGRNNIQVSCANCHGTVNHIAQHDMAQTAAECAQCHTKSVLDEHLTRTSTCATCHSSSRVEVQNA ITAGRAGTVVNCVTCHGQYNHPTAHTGKVSAPYADCNTCHITNLTDLHAQRGFQCAACHASTNTAITAAVQKGLGGQPVV CADCHNAIGGFGNHAKQHDMVTLNSTTGFIAAHEEKMVYCFTCHNNTNAGYQKAINDGMAGIPQTCTSCHAAYGNQPPVA NAGANVTTTVNKAVTLSGAASSDPDGTIVSYAWTFGDGTTGSGVSVTKTYATAGTYTVTLTVTDNAGASASATTIVTVQA APTSSSVFADQVLSMQRLYSVTSSDSNSSDVTANFRDGNTTDRYLLQYGSSGSNYVIAMKLNRDALTATKVVLRVYVSSI SSSRTLRIYPYQSNGTSVNTRYYTSYSTSSTGWKDIDVTSIAQQMNGYGWMKFRVTPTSNSLYVAEGAFQVQ
Sequences:
>Translated_712_residues MKTEDGSERGRLTVFALLALFLFVPIMQPEAHALVENNCRGCHNDAQGKTADRHHALLSLGKQCLDCHQMVGPSGSQTPV VVRDCIACHGDLIHQGRHHQLIAERGKQCLDCHQIVVDASGANTPVVVRDCSVCHATMNPKTNHNNAMADVSCAQCHNLG VVNEHLSRTSTCYTCHSSVNVTVQQTILSAKTGVVVTCTSCHVGFDHVAQHNMVVTPADCAGCHTQGVVYEHTNRTSTCA TCHQSTNATVQKTITDGRNNIQVSCANCHGTVNHIAQHDMAQTAAECAQCHTKSVLDEHLTRTSTCATCHSSSRVEVQNA ITAGRAGTVVNCVTCHGQYNHPTAHTGKVSAPYADCNTCHITNLTDLHAQRGFQCAACHASTNTAITAAVQKGLGGQPVV CADCHNAIGGFGNHAKQHDMVTLNSTTGFIAAHEEKMVYCFTCHNNTNAGYQKAINDGMAGIPQTCTSCHAAYGNQPPVA NAGANVTTTVNKAVTLSGAASSDPDGTIVSYAWTFGDGTTGSGVSVTKTYATAGTYTVTLTVTDNAGASASATTIVTVQA APTSSSVFADQVLSMQRLYSVTSSDSNSSDVTANFRDGNTTDRYLLQYGSSGSNYVIAMKLNRDALTATKVVLRVYVSSI SSSRTLRIYPYQSNGTSVNTRYYTSYSTSSTGWKDIDVTSIAQQMNGYGWMKFRVTPTSNSLYVAEGAFQVQ >Mature_712_residues MKTEDGSERGRLTVFALLALFLFVPIMQPEAHALVENNCRGCHNDAQGKTADRHHALLSLGKQCLDCHQMVGPSGSQTPV VVRDCIACHGDLIHQGRHHQLIAERGKQCLDCHQIVVDASGANTPVVVRDCSVCHATMNPKTNHNNAMADVSCAQCHNLG VVNEHLSRTSTCYTCHSSVNVTVQQTILSAKTGVVVTCTSCHVGFDHVAQHNMVVTPADCAGCHTQGVVYEHTNRTSTCA TCHQSTNATVQKTITDGRNNIQVSCANCHGTVNHIAQHDMAQTAAECAQCHTKSVLDEHLTRTSTCATCHSSSRVEVQNA ITAGRAGTVVNCVTCHGQYNHPTAHTGKVSAPYADCNTCHITNLTDLHAQRGFQCAACHASTNTAITAAVQKGLGGQPVV CADCHNAIGGFGNHAKQHDMVTLNSTTGFIAAHEEKMVYCFTCHNNTNAGYQKAINDGMAGIPQTCTSCHAAYGNQPPVA NAGANVTTTVNKAVTLSGAASSDPDGTIVSYAWTFGDGTTGSGVSVTKTYATAGTYTVTLTVTDNAGASASATTIVTVQA APTSSSVFADQVLSMQRLYSVTSSDSNSSDVTANFRDGNTTDRYLLQYGSSGSNYVIAMKLNRDALTATKVVLRVYVSSI SSSRTLRIYPYQSNGTSVNTRYYTSYSTSSTGWKDIDVTSIAQQMNGYGWMKFRVTPTSNSLYVAEGAFQVQ
Specific function: Unknown
COG id: COG3291
COG function: function code R; FOG: PKD repeat
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PKD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR017323 - InterPro: IPR009003 - InterPro: IPR022409 - InterPro: IPR000601 - InterPro: IPR002884 [H]
Pfam domain/function: PF01483 P_proprotein; PF00801 PKD [H]
EC number: =3.4.21.50 [H]
Molecular weight: Translated: 75579; Mature: 75579
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS50093 PKD ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 5.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTEDGSERGRLTVFALLALFLFVPIMQPEAHALVENNCRGCHNDAQGKTADRHHALLSL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH GKQCLDCHQMVGPSGSQTPVVVRDCIACHGDLIHQGRHHQLIAERGKQCLDCHQIVVDAS HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCEEEEEECC GANTPVVVRDCSVCHATMNPKTNHNNAMADVSCAQCHNLGVVNEHLSRTSTCYTCHSSVN CCCCCEEEEECCEEEEECCCCCCCCCCEECCHHHHHHCCCCHHHHHHCCCEEEEECCCCE VTVQQTILSAKTGVVVTCTSCHVGFDHVAQHNMVVTPADCAGCHTQGVVYEHTNRTSTCA EEEEHHHHHCCCCEEEEEEECCCCHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCHHH TCHQSTNATVQKTITDGRNNIQVSCANCHGTVNHIAQHDMAQTAAECAQCHTKSVLDEHL HHHCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRTSTCATCHSSSRVEVQNAITAGRAGTVVNCVTCHGQYNHPTAHTGKVSAPYADCNTCH HCCCHHHCCCCCCCEEEHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE ITNLTDLHAQRGFQCAACHASTNTAITAAVQKGLGGQPVVCADCHNAIGGFGNHAKQHDM ECCCHHHHHHCCCEEEEEECCCCCEEHHHHHHCCCCCCEEEECHHHHHCCCCCCCCCCCE VTLNSTTGFIAAHEEKMVYCFTCHNNTNAGYQKAINDGMAGIPQTCTSCHAAYGNQPPVA EEEECCCCEEEECCCCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC NAGANVTTTVNKAVTLSGAASSDPDGTIVSYAWTFGDGTTGSGVSVTKTYATAGTYTVTL CCCCCEEEEECEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEE TVTDNAGASASATTIVTVQAAPTSSSVFADQVLSMQRLYSVTSSDSNSSDVTANFRDGNT EEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC TDRYLLQYGSSGSNYVIAMKLNRDALTATKVVLRVYVSSISSSRTLRIYPYQSNGTSVNT CCHHHEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEE RYYTSYSTSSTGWKDIDVTSIAQQMNGYGWMKFRVTPTSNSLYVAEGAFQVQ EEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCEEEC >Mature Secondary Structure MKTEDGSERGRLTVFALLALFLFVPIMQPEAHALVENNCRGCHNDAQGKTADRHHALLSL CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH GKQCLDCHQMVGPSGSQTPVVVRDCIACHGDLIHQGRHHQLIAERGKQCLDCHQIVVDAS HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHCCEEEEEECC GANTPVVVRDCSVCHATMNPKTNHNNAMADVSCAQCHNLGVVNEHLSRTSTCYTCHSSVN CCCCCEEEEECCEEEEECCCCCCCCCCEECCHHHHHHCCCCHHHHHHCCCEEEEECCCCE VTVQQTILSAKTGVVVTCTSCHVGFDHVAQHNMVVTPADCAGCHTQGVVYEHTNRTSTCA EEEEHHHHHCCCCEEEEEEECCCCHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCHHH TCHQSTNATVQKTITDGRNNIQVSCANCHGTVNHIAQHDMAQTAAECAQCHTKSVLDEHL HHHCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TRTSTCATCHSSSRVEVQNAITAGRAGTVVNCVTCHGQYNHPTAHTGKVSAPYADCNTCH HCCCHHHCCCCCCCEEEHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE ITNLTDLHAQRGFQCAACHASTNTAITAAVQKGLGGQPVVCADCHNAIGGFGNHAKQHDM ECCCHHHHHHCCCEEEEEECCCCCEEHHHHHHCCCCCCEEEECHHHHHCCCCCCCCCCCE VTLNSTTGFIAAHEEKMVYCFTCHNNTNAGYQKAINDGMAGIPQTCTSCHAAYGNQPPVA EEEECCCCEEEECCCCEEEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC NAGANVTTTVNKAVTLSGAASSDPDGTIVSYAWTFGDGTTGSGVSVTKTYATAGTYTVTL CCCCCEEEEECEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCEEEEEE TVTDNAGASASATTIVTVQAAPTSSSVFADQVLSMQRLYSVTSSDSNSSDVTANFRDGNT EEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC TDRYLLQYGSSGSNYVIAMKLNRDALTATKVVLRVYVSSISSSRTLRIYPYQSNGTSVNT CCHHHEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEE RYYTSYSTSSTGWKDIDVTSIAQQMNGYGWMKFRVTPTSNSLYVAEGAFQVQ EEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2684982; 2492988 [H]