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The map label for this gene is ybaK [H]

Identifier: 78221617

GI number: 78221617

Start: 438987

End: 439472

Strand: Direct

Name: ybaK [H]

Synonym: Gmet_0396

Alternate gene names: 78221617

Gene position: 438987-439472 (Clockwise)

Preceding gene: 78221616

Following gene: 78221618

Centisome position: 10.98

GC content: 62.35

Gene sequence:

>486_bases
ATGGCTAAGGAGAGCAAAGCGCCGGTCACGGCTGCGGTGCGGGCGTTGCGCGCCGCGAAGGTCCCATTCACCGACCACCT
CTATGCCTATGAGGAAAAGGGGGGGACCGCCGTCTCCTCCCGGGAGCTGGAGGTGGACGAGCACGCCGTTGTGAAGACTC
TCATCATGGAGGACGAGGCGAAAAATCCGCTAATCGTCCTGATGCACGGGGACCGCCAGGTTTCCACCAAGGAGTTGGCC
CGGGTTCTGGGGGTGAAGGGGGTTTCTCCCTGCTCCCCCGACACGGCCCAGAAGCATACGGGATACCTCGTGGGGGGGAC
CTCTCCTTTCGGGACCCGCCGGCAGATGCCGGTCTGCATGGAAGAAACGATCCTTGACTTGCCCTGCATCTACATCAACG
GCGGCAAGCGGGGATATCTCGTGGGGATTGATCCCCGTGACGTGGTGAAGCTTCTCAATCCGACCCTGGTTCGGGTCGCC
ATCTGA

Upstream 100 bases:

>100_bases
AGAGCTTCGTGGAATAGCGCCCGCGAATCCCAACCATGAAAGCCGCGTCGGTATCCGGCGCGGCTTTCGCATTGCTGGAC
CATTCGTAGTGTGAGGAGCT

Downstream 100 bases:

>100_bases
GGGGGAACCCATGGACCTTCAGGAGAAAGTTCGCGTTGCCGCCGAGGCGGTGAAGCACGCCGATGCCATCGTCATGACCG
CCGGTGCCGGCATGGGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAKESKAPVTAAVRALRAAKVPFTDHLYAYEEKGGTAVSSRELEVDEHAVVKTLIMEDEAKNPLIVLMHGDRQVSTKELA
RVLGVKGVSPCSPDTAQKHTGYLVGGTSPFGTRRQMPVCMEETILDLPCIYINGGKRGYLVGIDPRDVVKLLNPTLVRVA
I

Sequences:

>Translated_161_residues
MAKESKAPVTAAVRALRAAKVPFTDHLYAYEEKGGTAVSSRELEVDEHAVVKTLIMEDEAKNPLIVLMHGDRQVSTKELA
RVLGVKGVSPCSPDTAQKHTGYLVGGTSPFGTRRQMPVCMEETILDLPCIYINGGKRGYLVGIDPRDVVKLLNPTLVRVA
I
>Mature_160_residues
AKESKAPVTAAVRALRAAKVPFTDHLYAYEEKGGTAVSSRELEVDEHAVVKTLIMEDEAKNPLIVLMHGDRQVSTKELAR
VLGVKGVSPCSPDTAQKHTGYLVGGTSPFGTRRQMPVCMEETILDLPCIYINGGKRGYLVGIDPRDVVKLLNPTLVRVAI

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=164, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17485; Mature: 17353

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKESKAPVTAAVRALRAAKVPFTDHLYAYEEKGGTAVSSRELEVDEHAVVKTLIMEDEA
CCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHCCC
KNPLIVLMHGDRQVSTKELARVLGVKGVSPCSPDTAQKHTGYLVGGTSPFGTRRQMPVCM
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCCCHHH
EETILDLPCIYINGGKRGYLVGIDPRDVVKLLNPTLVRVAI
HHHHHCCCEEEEECCCEEEEEECCHHHHHHHCCCEEEEEEC
>Mature Secondary Structure 
AKESKAPVTAAVRALRAAKVPFTDHLYAYEEKGGTAVSSRELEVDEHAVVKTLIMEDEA
CCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHCCC
KNPLIVLMHGDRQVSTKELARVLGVKGVSPCSPDTAQKHTGYLVGGTSPFGTRRQMPVCM
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCCCCHHH
EETILDLPCIYINGGKRGYLVGIDPRDVVKLLNPTLVRVAI
HHHHHCCCEEEEECCCEEEEEECCHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]