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The map label for this gene is cspLA [H]

Identifier: 78221561

GI number: 78221561

Start: 379793

End: 379993

Strand: Direct

Name: cspLA [H]

Synonym: Gmet_0340

Alternate gene names: 78221561

Gene position: 379793-379993 (Clockwise)

Preceding gene: 78221560

Following gene: 78221563

Centisome position: 9.5

GC content: 53.73

Gene sequence:

>201_bases
ATGGCAAACGGTACAGTAAAGTGGTTCAACGACAGCAAGGGGTTTGGTTTTCTGGAGCAGGAGAACGGCGAGGACGTATT
TGTCCACTTCTCGGCCATCAACGGCGACGGTTTCAAATCCCTTACTGAAGGTGATAGGGTAACGTTCGACGTCGTCAAGG
GCCCGAAAGGCCTGCAGGCGGCCAACGTAACCAGGGTGTAA

Upstream 100 bases:

>100_bases
AAATTATTCGTGGACTTTTGGGTGGAAAAGCTGGTAGAGTGCCCTATGTCCGTGGATGTACCAGGACGAACTAACAACAG
CAGCAGGAGAAAGAAAGAAC

Downstream 100 bases:

>100_bases
CTGATACGAGCCCTGCGAAACGAAGAAGGCCCCGGAGCAATCCGGGGCCTTCTCTTTTTATTCAACGTCTACATCTCGCC
CCTGTTGCCGTAGCGACCCT

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MANGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKGPKGLQAANVTRV

Sequences:

>Translated_66_residues
MANGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKGPKGLQAANVTRV
>Mature_65_residues
ANGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKGPKGLQAANVTRV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=63.9344262295082, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=52.2388059701493, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=57.8125, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=57.3770491803279, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=53.125, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=48.4375, Blast_Score=64, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7181; Mature: 7050

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
ANVTRV
CCEECC
>Mature Secondary Structure 
ANGTVKWFNDSKGFGFLEQENGEDVFVHFSAINGDGFKSLTEGDRVTFDVVKGPKGLQA
CCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCC
ANVTRV
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]