Click here to switch to the map view.

The map label for this gene is yjiN [H]

Identifier: 78221450

GI number: 78221450

Start: 258617

End: 259876

Strand: Direct

Name: yjiN [H]

Synonym: Gmet_0227

Alternate gene names: 78221450

Gene position: 258617-259876 (Clockwise)

Preceding gene: 78221449

Following gene: 78221452

Centisome position: 6.47

GC content: 62.62

Gene sequence:

>1260_bases
GTGGACACCAGAAAGCAAGCATTGATCAGAAACAAGACCATAGCAACGGGATTGATGATTGGCGCGGCGATCCTGTTTGT
AATCGCCCGCCTGCAGAAGGGACATGGCGCCTGGGAGTGGGTGGCCGCGTTCGCGGAGGCGGCCATGGTGGGCGCCCTGG
CAGACTGGTTTGCGGTGGTGGCCCTGTTTCGCCACCCGCTGGGGGTGCCGATTCCCCATACGGCGATCATCAAGAACAAG
AAGGACGCCATTGCCGGGAACCTGGCCGGCTTCATCCGTGACAAGTTCCTTGCCACCGACACGCTGATCGCCAAAATGAG
GGCCTACAACCCGGCCGAGCACCTGGCCGTCTACCTGATGGCGCGGGACAATGCCGCCGGCATGGCCAGGGGGGTGACCC
GGCTCTGCGCCGACTCCCTGGATTTTATCGATGACGAGCGGGTGCAGCGATTGCTGAGAGCCGCGCTGAGTAACCGGATT
GACAGCTTTGATGTCTCGACCTCCGCCGGAACGGTTCTCGATGCCCTGCGTAAGGACAATCGCCACCAGGTCGTGCTCGA
TGACCTGTTGCAACGCTGTGCCGGGTGGCTGGCCGGCGAGGAGGCCCAGGCGCGGCTGGCCACGGCCATCGACGACATGT
GCGCCAAGGAATATCCGCTGCTGATGGCGTTTCTTCCCAACCGGGACAAGTTCGCCCGGGGGGCGGGGGAGAAGATCGTC
AAGAGGATCAACGCCTTCATCCAGGAGGTCAATGCCGACCCCGGCCATGAGGTCCGGTACCGCTTTGACACCGCCGTGAC
CGGCTTCATCGCCCGGCTGAAGACCGACCCGGTGCTGCGCGACAAGATCGAGGCGATCAAGCGCGACGTTGTCCATAACC
AGGCCATCAGCGATTACGCGCAGAGTATCGGCAGCGACCTCAAGAACTGGCTGAAGAACGATCTGCAGCAGCCCGAGTCG
CAGGTGCGGGAGAAAGTTGCGGCGGCGGTTGCCGGCCTCGGTACGACCCTGGCGCACAACAAGGAACTGCAGGAGTCCCT
GAACGCACACCTGGAAACGCTGGTGCTGCACTACGGGGATACGCTGCGCACGGCGATTGCCGGCCACATAACCGGCACCA
TGCAGCAGTGGGAACACGAAGACTATACCAACGAGATCGAGCTGAGCATCGGTTCCGATCTGCAGTTCATCCGGATGAAC
GGCACCCTGGTGGGAGGGGTGATCGGCCTGCTGCTGCACGCCATCTCGCTGCTGCTGTAA

Upstream 100 bases:

>100_bases
CATGTCATAAATCAACTGCCTGACGGGAAGCCGCTTCCACCTCATGAAGCGGCTTTCGTTCGTCATGGGCTGGCGCGAAA
AAATGATCCGGAGAACGTGT

Downstream 100 bases:

>100_bases
GTGGCAGCTACGACGTTATGCTCAATTGAACAGGTGCCAGACCGCCCACCGCATGTGCGCCATGCATGTCCGTTCTGCGA
ATAATCAGATCGGCACGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MDTRKQALIRNKTIATGLMIGAAILFVIARLQKGHGAWEWVAAFAEAAMVGALADWFAVVALFRHPLGVPIPHTAIIKNK
KDAIAGNLAGFIRDKFLATDTLIAKMRAYNPAEHLAVYLMARDNAAGMARGVTRLCADSLDFIDDERVQRLLRAALSNRI
DSFDVSTSAGTVLDALRKDNRHQVVLDDLLQRCAGWLAGEEAQARLATAIDDMCAKEYPLLMAFLPNRDKFARGAGEKIV
KRINAFIQEVNADPGHEVRYRFDTAVTGFIARLKTDPVLRDKIEAIKRDVVHNQAISDYAQSIGSDLKNWLKNDLQQPES
QVREKVAAAVAGLGTTLAHNKELQESLNAHLETLVLHYGDTLRTAIAGHITGTMQQWEHEDYTNEIELSIGSDLQFIRMN
GTLVGGVIGLLLHAISLLL

Sequences:

>Translated_419_residues
MDTRKQALIRNKTIATGLMIGAAILFVIARLQKGHGAWEWVAAFAEAAMVGALADWFAVVALFRHPLGVPIPHTAIIKNK
KDAIAGNLAGFIRDKFLATDTLIAKMRAYNPAEHLAVYLMARDNAAGMARGVTRLCADSLDFIDDERVQRLLRAALSNRI
DSFDVSTSAGTVLDALRKDNRHQVVLDDLLQRCAGWLAGEEAQARLATAIDDMCAKEYPLLMAFLPNRDKFARGAGEKIV
KRINAFIQEVNADPGHEVRYRFDTAVTGFIARLKTDPVLRDKIEAIKRDVVHNQAISDYAQSIGSDLKNWLKNDLQQPES
QVREKVAAAVAGLGTTLAHNKELQESLNAHLETLVLHYGDTLRTAIAGHITGTMQQWEHEDYTNEIELSIGSDLQFIRMN
GTLVGGVIGLLLHAISLLL
>Mature_419_residues
MDTRKQALIRNKTIATGLMIGAAILFVIARLQKGHGAWEWVAAFAEAAMVGALADWFAVVALFRHPLGVPIPHTAIIKNK
KDAIAGNLAGFIRDKFLATDTLIAKMRAYNPAEHLAVYLMARDNAAGMARGVTRLCADSLDFIDDERVQRLLRAALSNRI
DSFDVSTSAGTVLDALRKDNRHQVVLDDLLQRCAGWLAGEEAQARLATAIDDMCAKEYPLLMAFLPNRDKFARGAGEKIV
KRINAFIQEVNADPGHEVRYRFDTAVTGFIARLKTDPVLRDKIEAIKRDVVHNQAISDYAQSIGSDLKNWLKNDLQQPES
QVREKVAAAVAGLGTTLAHNKELQESLNAHLETLVLHYGDTLRTAIAGHITGTMQQWEHEDYTNEIELSIGSDLQFIRMN
GTLVGGVIGLLLHAISLLL

Specific function: Unknown

COG id: COG2733

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790793, Length=382, Percent_Identity=37.9581151832461, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007383 [H]

Pfam domain/function: PF04286 DUF445 [H]

EC number: NA

Molecular weight: Translated: 46130; Mature: 46130

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRKQALIRNKTIATGLMIGAAILFVIARLQKGHGAWEWVAAFAEAAMVGALADWFAVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALFRHPLGVPIPHTAIIKNKKDAIAGNLAGFIRDKFLATDTLIAKMRAYNPAEHLAVYLM
HHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
ARDNAAGMARGVTRLCADSLDFIDDERVQRLLRAALSNRIDSFDVSTSAGTVLDALRKDN
ECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
RHQVVLDDLLQRCAGWLAGEEAQARLATAIDDMCAKEYPLLMAFLPNRDKFARGAGEKIV
CCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCHHHHHH
KRINAFIQEVNADPGHEVRYRFDTAVTGFIARLKTDPVLRDKIEAIKRDVVHNQAISDYA
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QSIGSDLKNWLKNDLQQPESQVREKVAAAVAGLGTTLAHNKELQESLNAHLETLVLHYGD
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
TLRTAIAGHITGTMQQWEHEDYTNEIELSIGSDLQFIRMNGTLVGGVIGLLLHAISLLL
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDTRKQALIRNKTIATGLMIGAAILFVIARLQKGHGAWEWVAAFAEAAMVGALADWFAVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALFRHPLGVPIPHTAIIKNKKDAIAGNLAGFIRDKFLATDTLIAKMRAYNPAEHLAVYLM
HHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
ARDNAAGMARGVTRLCADSLDFIDDERVQRLLRAALSNRIDSFDVSTSAGTVLDALRKDN
ECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
RHQVVLDDLLQRCAGWLAGEEAQARLATAIDDMCAKEYPLLMAFLPNRDKFARGAGEKIV
CCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCHHHHHH
KRINAFIQEVNADPGHEVRYRFDTAVTGFIARLKTDPVLRDKIEAIKRDVVHNQAISDYA
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
QSIGSDLKNWLKNDLQQPESQVREKVAAAVAGLGTTLAHNKELQESLNAHLETLVLHYGD
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
TLRTAIAGHITGTMQQWEHEDYTNEIELSIGSDLQFIRMNGTLVGGVIGLLLHAISLLL
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]