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The map label for this gene is recA

Identifier: 78221422

GI number: 78221422

Start: 229709

End: 230728

Strand: Direct

Name: recA

Synonym: Gmet_0198

Alternate gene names: 78221422

Gene position: 229709-230728 (Clockwise)

Preceding gene: 78221421

Following gene: 78221423

Centisome position: 5.75

GC content: 65.39

Gene sequence:

>1020_bases
GTGACCCAGGAACGCGAGAAGGCGATTGAGCTGGCACTGAGCCAGATAGAGAAGCAGTTCGGCAAGGGCGCCATCATGCG
GCTGGGTGCTGACGAGGCCCTGCCGGACATCGACGCCATCCCCACCGGCGCCCTCTCCCTGGATATCGCCCTGGGGGTGG
GCGGGGTTCCCCGGGGACGGGTCATCGAGATCTACGGCCCCGAGTCGTCGGGCAAGACGACCCTCGCCCTCCACATCGCC
GCCGAGGCCCAGAAGCTGGGCGGCATCGCGGCCTTCGTGGATGCCGAGCACGCCCTGGACATCGGCTATGCCCGCAAGCT
GGGTGTTCGGACCGACGACCTCCTGGTCTCCCAGCCCGACACGGGGGAGCAGGCCCTTGAGATCGCCGAGATGCTCGTGC
GGAGCGGCGCCGTGGACGTCCTCGTCATCGACTCGGTGGCGGCCCTCGTTCCCAAGGCCGAGATCGAGGGGGAGATGGGG
GACTCCCACGTGGGGCTCCAGGCCCGCCTCATGTCCCAGGCCCTGCGCAAGCTCACCGGCATCATCTCCAAGTCCAACTG
CTGCGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACG
CCCTCAAGTTCTACGCTTCGGTCCGCCTCGACATCCGCAAGATCGCCACCCTCAAGCAGGGGGATGCGGTGATCGGCTCC
CGCACCAAGGTGAAGGTGGTGAAGAACAAGGTGGCTCCCCCCTTCAGGGAGGTGGAGTTCGACATCTACTACGGCGAGGG
GATATCCCGCCTGGGGGACCTCCTGGACCTGGCCGTTGACCGCAAGATCATCGACAAGAGCGGTGCCTGGTTTTCCTACG
GCTCCGACCGGATCGGCCAGGGACGCGAGAACTCCCGGAATTTCCTCAAGGAGCATCCGGAGATGGTGGCCGAAATCGAG
GACAAGATTTACGAAACGGCCGGCATTCCCCGCAAAGGGGGGAAGGAAGAGGCGGCGTAG

Upstream 100 bases:

>100_bases
ATACCCGTTGAAAAAGACGAAACACCTGTGCTATCTCTGTTCAACTATACCGGTCAGTGGCGATTTTTCGCCCTGCCGAC
GACCCCAGAGGAGGAATTCC

Downstream 100 bases:

>100_bases
CCCATGGAACTCAATGATATTCTTGCCATAGCGGTCAAGGCTAAAGCGTCTGATATCCACATCAAGACGGGGCTCCCCCC
GGTTGTCCGGATCGATGGAC

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTQEREKAIELALSQIEKQFGKGAIMRLGADEALPDIDAIPTGALSLDIALGVGGVPRGRVIEIYGPESSGKTTLALHIA
AEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPDTGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGS
RTKVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQGRENSRNFLKEHPEMVAEIE
DKIYETAGIPRKGGKEEAA

Sequences:

>Translated_339_residues
MTQEREKAIELALSQIEKQFGKGAIMRLGADEALPDIDAIPTGALSLDIALGVGGVPRGRVIEIYGPESSGKTTLALHIA
AEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPDTGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGS
RTKVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQGRENSRNFLKEHPEMVAEIE
DKIYETAGIPRKGGKEEAA
>Mature_338_residues
TQEREKAIELALSQIEKQFGKGAIMRLGADEALPDIDAIPTGALSLDIALGVGGVPRGRVIEIYGPESSGKTTLALHIAA
EAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPDTGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGSR
TKVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQGRENSRNFLKEHPEMVAEIED
KIYETAGIPRKGGKEEAA

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family

Homologues:

Organism=Escherichia coli, GI1789051, Length=323, Percent_Identity=66.2538699690403, Blast_Score=446, Evalue=1e-127,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): RECA_GEOMG (Q39Z80)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_383169.1
- ProteinModelPortal:   Q39Z80
- SMR:   Q39Z80
- STRING:   Q39Z80
- GeneID:   3739660
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_0198
- NMPDR:   fig|269799.3.peg.229
- eggNOG:   COG0468
- HOGENOM:   HBG339889
- OMA:   GRDNTIT
- PhylomeDB:   Q39Z80
- ProtClustDB:   PRK09354
- BioCyc:   GMET269799:GMET_0198-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00268
- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587
- PANTHER:   PTHR22942:SF1
- PRINTS:   PR00142
- SMART:   SM00382
- TIGRFAMs:   TIGR02012

Pfam domain/function: PF00154 RecA

EC number: NA

Molecular weight: Translated: 36476; Mature: 36345

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00321 RECA_1; PS50162 RECA_2; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEREKAIELALSQIEKQFGKGAIMRLGADEALPDIDAIPTGALSLDIALGVGGVPRGR
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
VIEIYGPESSGKTTLALHIAAEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPD
EEEEECCCCCCCEEEEEEEEEHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCC
TGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG
CCHHHHHHHHHHHHCCCCEEEEECHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
IISKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGS
HHCCCCEEEEEEEHEEEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCEEECC
RTKVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQ
CCEEEEEHHCCCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
GRENSRNFLKEHPEMVAEIEDKIYETAGIPRKGGKEEAA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TQEREKAIELALSQIEKQFGKGAIMRLGADEALPDIDAIPTGALSLDIALGVGGVPRGR
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
VIEIYGPESSGKTTLALHIAAEAQKLGGIAAFVDAEHALDIGYARKLGVRTDDLLVSQPD
EEEEECCCCCCCEEEEEEEEEHHHHHCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCC
TGEQALEIAEMLVRSGAVDVLVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTG
CCHHHHHHHHHHHHCCCCEEEEECHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
IISKSNCCVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRKIATLKQGDAVIGS
HHCCCCEEEEEEEHEEEEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCEEECC
RTKVKVVKNKVAPPFREVEFDIYYGEGISRLGDLLDLAVDRKIIDKSGAWFSYGSDRIGQ
CCEEEEEHHCCCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
GRENSRNFLKEHPEMVAEIEDKIYETAGIPRKGGKEEAA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA