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The map label for this gene is yhgF [C]

Identifier: 78221406

GI number: 78221406

Start: 210642

End: 212915

Strand: Direct

Name: yhgF [C]

Synonym: Gmet_0182

Alternate gene names: 78221406

Gene position: 210642-212915 (Clockwise)

Preceding gene: 78221405

Following gene: 78221409

Centisome position: 5.27

GC content: 67.72

Gene sequence:

>2274_bases
ATGAGCCTGAACAACGACGTACTCACGAAAATCACCACCTTCATCATCGAAGAGACCGGCCTGAAGCCGTTCCAGGTGGA
AAACACCGTGGAGCTCCTAAAGGAGGGGGCCACGGTGCCGTTCATCGCCCGGTACCGGAAGGAGCGGACCGGGGAGCTGG
ACGAGGTGCAGATCCGCACCGTGGAGGAGCGCCTCGGCTACTTCACCGAGCTGGAGGAGCGGAAGGTCACGGTGCTGAAG
TCCATCGAGGAGCAGGGGAAGCTGACCCCCGAGCTGAAGCTCCGCATCGTGGGCTCCCGGCAGAAGACGGAGGTGGAGGA
CCTCTACCTCCCCTACAAGCCCAAGCGCCGCACCAAGGCCACCATTGCCAAGGAGCGGGGGCTGGAGCCCCTGGCCGAGA
TCTTGGCGGCCCAGGAACTTATGGCCGGCACGCCGGAGGAGGTGGCGCTCCCCTTCGTGGACCCGGCCAGGGAGGTCCCC
GACGCGGCTGCGGCCCTGGAGGGGGCAGGGCATATCCTGGCGGAGCGGCTGGCCGACGATGCCGACGCCCGGGCCTTTGT
CCGCCGACTCACCTGGGACGACGGCATCTTCGCCTCCCGGGTGGCCAGCGACAAGAAGGAAGCGGTCACCAAGTTCGAGA
TGTACTACGACCACCGGGAGCCTCTGAAGAGCGTCCCCTCCCACCGGATGCTCGCCATGCGCCGGGGGGAGAAGGAGGAG
GTGCTGCTTTTGGCCGTGGAGGCGCCGGTGGCGGAGATCCACACCGGCCTCAAGGGACGGCTCGCGACCCGGGAAAGCAT
TTTCCGGCCGCTCCTGGAGCGGGTGGCCGAGGATGCCTACAAGCGGCTCATGGCCCCCTCCATCGAGGTGGAGCTGCGAC
TTGAGGCCAAAAAGCTGGCCGACGAGGCGGCCATCCGGGTCTTTGCCCAGAACCTGCGGAATCTCCTCCTGGCCCCTCCG
GCCGGGGGGAAGTGGGCCCTCGGCATCGACCCGGGGCTTCGGACCGGCTCCAAGCTGGCGGCGGTGGACGGCACCGGCCG
CTTCCTGGAGCACGTGACCATCTACCCCCACACCGGCGAGGCGCGTGTCGCCGGGGCGAAGAAAGATTTCCTGCGCCTCG
TTGAAGCCCACGATGTCGAGATGATTGCCGTGGGGAACGGCACCGCCGGCCGCGAGATTGAGCAGTTCGCCAAGGAGACC
CTGGCCGAGGCGGGTAAGCGGGTGCCGGTGGTCATGGTGAGCGAGGCCGGGGCCAGTGTCTACTCGGCGTCGGAGATTGC
CCGGGAGGAGTTCCCGGAGCTGGACCTCACGGTGAGGGGGGCCATCTCCATCGCCCGCCGCCTCCAGGATCCCCTGGCGG
AGCTGGTGAAGATCGATCCCAAGAGCATCGGCGTCGGGCAGTACCAGCACGACGTGGACCAGAAGGCCCTGAAAAAAGCC
CTGGACGATGTGGTGGAGTCGTGCGTCAACTTTGTCGGCGTTGATCTCAACACCGCTTCCTGGGCGCTTCTCTCCTACGT
CTCGGGGGTGGGGCAGTCCCTGGCCAAGGCCATCGTGACCCGGCGGGACGCCGAGGGCCCCTTCGCCTCCCGGCGGGGGC
TCCTGAAGGTCCCCCGCTTTGGCGAGAAGGCCTTTGAGCAGGCGGCGGGCTTCCTCCGCATCCGGGGGGGCGAGCATCCC
CTCGACAACACCGCTGTCCACCCGGAGCGCTACCCGGTGGTGGAGGCCATGGCCGCCGATCTGGGCGCGTCCCTGGCACA
GCTTGCCGCCGATCCGGCCCTGGTGGCGCGGATCGACCTCAAGCGCTACGTGACCGGGGACCTGGGACTCCCGACCCTGC
GGGACATCGTGGCGGAGCTGAAAAAGCCGGGGCGCGACCCCCGGGAGGAGTTCAAGACCGCCGCCTTCCGGGACGACATC
CGGGAGTTGTCAGACCTCAAGGAGGGGATGGTGCTCCAGGGGGTGGTGACCAACGTCACCGCCTTCGGCGCCTTTGTGGA
TATCGGCGTCCACCAGGACGGCCTCGTCCATGTGAGCCATCTCTCCACCCGGTTCGTCAAGGATCCCAACGAGGCGGTGC
GGGTGGGGGAGGTGGTGAAGGTGAAGGTCCTGGCCGTGGACGTGCCCCGAAAGCGCATCTCCCTCTCCATCCGCGAGGCC
ATGGAAGGGGGAGCGCGCCCCAAGAGCGAGCGTCCGCCCCGAGAGGAGAAGGGCTCCGGCGGTCTCGACCTGGCGAAGCT
GGAAAAGGCAGGCTTCCGGGTGAAGAAGCGGTGA

Upstream 100 bases:

>100_bases
GGATGCGCGGGTGACCCTTGCCGCCCGCTTCCCTCTTTCAAGTCTGCCCCCCCTGTGGTAGTATCCTTCCCCTTTTCATC
CGCCGAACAAAGGACCATCC

Downstream 100 bases:

>100_bases
TTGCGGGTGATCTCCTTGACATTCCGGCTACTTGCGGTATTGTTTTTTAGGCGCGGTTAATGCTGCGCCGCACAAGAAAC
CCGGAATGCGGAAGGAGGAA

Product: RNA binding S1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 757; Mature: 756

Protein sequence:

>757_residues
MSLNNDVLTKITTFIIEETGLKPFQVENTVELLKEGATVPFIARYRKERTGELDEVQIRTVEERLGYFTELEERKVTVLK
SIEEQGKLTPELKLRIVGSRQKTEVEDLYLPYKPKRRTKATIAKERGLEPLAEILAAQELMAGTPEEVALPFVDPAREVP
DAAAALEGAGHILAERLADDADARAFVRRLTWDDGIFASRVASDKKEAVTKFEMYYDHREPLKSVPSHRMLAMRRGEKEE
VLLLAVEAPVAEIHTGLKGRLATRESIFRPLLERVAEDAYKRLMAPSIEVELRLEAKKLADEAAIRVFAQNLRNLLLAPP
AGGKWALGIDPGLRTGSKLAAVDGTGRFLEHVTIYPHTGEARVAGAKKDFLRLVEAHDVEMIAVGNGTAGREIEQFAKET
LAEAGKRVPVVMVSEAGASVYSASEIAREEFPELDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVDQKALKKA
LDDVVESCVNFVGVDLNTASWALLSYVSGVGQSLAKAIVTRRDAEGPFASRRGLLKVPRFGEKAFEQAAGFLRIRGGEHP
LDNTAVHPERYPVVEAMAADLGASLAQLAADPALVARIDLKRYVTGDLGLPTLRDIVAELKKPGRDPREEFKTAAFRDDI
RELSDLKEGMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREA
MEGGARPKSERPPREEKGSGGLDLAKLEKAGFRVKKR

Sequences:

>Translated_757_residues
MSLNNDVLTKITTFIIEETGLKPFQVENTVELLKEGATVPFIARYRKERTGELDEVQIRTVEERLGYFTELEERKVTVLK
SIEEQGKLTPELKLRIVGSRQKTEVEDLYLPYKPKRRTKATIAKERGLEPLAEILAAQELMAGTPEEVALPFVDPAREVP
DAAAALEGAGHILAERLADDADARAFVRRLTWDDGIFASRVASDKKEAVTKFEMYYDHREPLKSVPSHRMLAMRRGEKEE
VLLLAVEAPVAEIHTGLKGRLATRESIFRPLLERVAEDAYKRLMAPSIEVELRLEAKKLADEAAIRVFAQNLRNLLLAPP
AGGKWALGIDPGLRTGSKLAAVDGTGRFLEHVTIYPHTGEARVAGAKKDFLRLVEAHDVEMIAVGNGTAGREIEQFAKET
LAEAGKRVPVVMVSEAGASVYSASEIAREEFPELDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVDQKALKKA
LDDVVESCVNFVGVDLNTASWALLSYVSGVGQSLAKAIVTRRDAEGPFASRRGLLKVPRFGEKAFEQAAGFLRIRGGEHP
LDNTAVHPERYPVVEAMAADLGASLAQLAADPALVARIDLKRYVTGDLGLPTLRDIVAELKKPGRDPREEFKTAAFRDDI
RELSDLKEGMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREA
MEGGARPKSERPPREEKGSGGLDLAKLEKAGFRVKKR
>Mature_756_residues
SLNNDVLTKITTFIIEETGLKPFQVENTVELLKEGATVPFIARYRKERTGELDEVQIRTVEERLGYFTELEERKVTVLKS
IEEQGKLTPELKLRIVGSRQKTEVEDLYLPYKPKRRTKATIAKERGLEPLAEILAAQELMAGTPEEVALPFVDPAREVPD
AAAALEGAGHILAERLADDADARAFVRRLTWDDGIFASRVASDKKEAVTKFEMYYDHREPLKSVPSHRMLAMRRGEKEEV
LLLAVEAPVAEIHTGLKGRLATRESIFRPLLERVAEDAYKRLMAPSIEVELRLEAKKLADEAAIRVFAQNLRNLLLAPPA
GGKWALGIDPGLRTGSKLAAVDGTGRFLEHVTIYPHTGEARVAGAKKDFLRLVEAHDVEMIAVGNGTAGREIEQFAKETL
AEAGKRVPVVMVSEAGASVYSASEIAREEFPELDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVDQKALKKAL
DDVVESCVNFVGVDLNTASWALLSYVSGVGQSLAKAIVTRRDAEGPFASRRGLLKVPRFGEKAFEQAAGFLRIRGGEHPL
DNTAVHPERYPVVEAMAADLGASLAQLAADPALVARIDLKRYVTGDLGLPTLRDIVAELKKPGRDPREEFKTAAFRDDIR
ELSDLKEGMVLQGVVTNVTAFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREAM
EGGARPKSERPPREEKGSGGLDLAKLEKAGFRVKKR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=785, Percent_Identity=32.8662420382166, Blast_Score=376, Evalue=1e-104,
Organism=Homo sapiens, GI27597090, Length=458, Percent_Identity=24.6724890829694, Blast_Score=82, Evalue=2e-15,
Organism=Escherichia coli, GI87082262, Length=761, Percent_Identity=51.2483574244415, Blast_Score=689, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=111, Percent_Identity=39.6396396396396, Blast_Score=76, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=729, Percent_Identity=28.5322359396433, Blast_Score=216, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI17552892, Length=293, Percent_Identity=28.6689419795222, Blast_Score=78, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321552, Length=218, Percent_Identity=27.9816513761468, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI62484314, Length=774, Percent_Identity=32.4289405684755, Blast_Score=391, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 83283; Mature: 83152

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNNDVLTKITTFIIEETGLKPFQVENTVELLKEGATVPFIARYRKERTGELDEVQIRT
CCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHH
VEERLGYFTELEERKVTVLKSIEEQGKLTPELKLRIVGSRQKTEVEDLYLPYKPKRRTKA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHEECCCCCCCHHHH
TIAKERGLEPLAEILAAQELMAGTPEEVALPFVDPAREVPDAAAALEGAGHILAERLADD
HHHHHCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC
ADARAFVRRLTWDDGIFASRVASDKKEAVTKFEMYYDHREPLKSVPSHRMLAMRRGEKEE
HHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
VLLLAVEAPVAEIHTGLKGRLATRESIFRPLLERVAEDAYKRLMAPSIEVELRLEAKKLA
EEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
DEAAIRVFAQNLRNLLLAPPAGGKWALGIDPGLRTGSKLAAVDGTGRFLEHVTIYPHTGE
HHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHEEEEECCCCC
ARVAGAKKDFLRLVEAHDVEMIAVGNGTAGREIEQFAKETLAEAGKRVPVVMVSEAGASV
CEECCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
YSASEIAREEFPELDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVDQKALKKA
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LDDVVESCVNFVGVDLNTASWALLSYVSGVGQSLAKAIVTRRDAEGPFASRRGLLKVPRF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCC
GEKAFEQAAGFLRIRGGEHPLDNTAVHPERYPVVEAMAADLGASLAQLAADPALVARIDL
CHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KRYVTGDLGLPTLRDIVAELKKPGRDPREEFKTAAFRDDIRELSDLKEGMVLQGVVTNVT
HHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREA
HHHHHEEECCCCCCCEEHHHHHHHHHCCCHHHHHHCCEEEEEEEEEECCHHHHHHHHHHH
MEGGARPKSERPPREEKGSGGLDLAKLEKAGFRVKKR
HCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
SLNNDVLTKITTFIIEETGLKPFQVENTVELLKEGATVPFIARYRKERTGELDEVQIRT
CCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHH
VEERLGYFTELEERKVTVLKSIEEQGKLTPELKLRIVGSRQKTEVEDLYLPYKPKRRTKA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHEECCCCCCCHHHH
TIAKERGLEPLAEILAAQELMAGTPEEVALPFVDPAREVPDAAAALEGAGHILAERLADD
HHHHHCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC
ADARAFVRRLTWDDGIFASRVASDKKEAVTKFEMYYDHREPLKSVPSHRMLAMRRGEKEE
HHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
VLLLAVEAPVAEIHTGLKGRLATRESIFRPLLERVAEDAYKRLMAPSIEVELRLEAKKLA
EEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
DEAAIRVFAQNLRNLLLAPPAGGKWALGIDPGLRTGSKLAAVDGTGRFLEHVTIYPHTGE
HHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHEEEEECCCCC
ARVAGAKKDFLRLVEAHDVEMIAVGNGTAGREIEQFAKETLAEAGKRVPVVMVSEAGASV
CEECCCHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
YSASEIAREEFPELDLTVRGAISIARRLQDPLAELVKIDPKSIGVGQYQHDVDQKALKKA
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
LDDVVESCVNFVGVDLNTASWALLSYVSGVGQSLAKAIVTRRDAEGPFASRRGLLKVPRF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCC
GEKAFEQAAGFLRIRGGEHPLDNTAVHPERYPVVEAMAADLGASLAQLAADPALVARIDL
CHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KRYVTGDLGLPTLRDIVAELKKPGRDPREEFKTAAFRDDIRELSDLKEGMVLQGVVTNVT
HHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AFGAFVDIGVHQDGLVHVSHLSTRFVKDPNEAVRVGEVVKVKVLAVDVPRKRISLSIREA
HHHHHEEECCCCCCCEEHHHHHHHHHCCCHHHHHHCCEEEEEEEEEECCHHHHHHHHHHH
MEGGARPKSERPPREEKGSGGLDLAKLEKAGFRVKKR
HCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]