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The map label for this gene is ymdC [H]

Identifier: 78221305

GI number: 78221305

Start: 95728

End: 97236

Strand: Reverse

Name: ymdC [H]

Synonym: Gmet_0078

Alternate gene names: 78221305

Gene position: 97236-95728 (Counterclockwise)

Preceding gene: 78221306

Following gene: 78221304

Centisome position: 2.43

GC content: 67.26

Gene sequence:

>1509_bases
ATGATCCGACCTCTGCTCCTTATCACCCTGTCACTCCTTCTCATACTCACCGCCGTTCCCGGCGCACGCCTGTCAGCCGC
CGAAACCACCCCGGTAACGCTTCCCCTGGCCCGGAGCATCCAGCCCCTGCTGTCTGCCCACCCCGGCAAGACCGGCCTCT
ATGTCTTGGAAAAGGGGGAAGAGTCGCTCCTGGCCCGGGCGTGGCTCGCGGACCACGCCACGAAGAGCATCGACGTCCAG
TATTTCATCTGGAGCAGCGACAACATCGGCATCCTGGCCTCGGAGGCGTTGCTGCGGGCGGCGGAGCGGGGGATACGGGT
GCGGGTGCTGGTGGATGACCTCCTCATCGACGCGCCGCCGGAATCGCTCCTGGCCCTGGCCCGTCACCCCAACATCGACA
TCCGGATCTACAACCCGAAGATGACGGTGGGAACCTCGAAGGTGAAGCGGTTCGCCAACGTTGTGACCGGCTTCCGTTCC
GTGAACCAGCGGATGCACGACAAGACCGCCCTCTTCGACGGCATGGTGGGGATCACCGGCGGCCGCAACATGGCCGACGA
GTACTACGATTTCGACCAGGAGTACACCTTCCGGGACCGGGACATGCTGATGCTCGGCCCGACTGTGGCCGAGGCGGAGG
CGAGCTTCGCCCGTTTCTGGGAGAGCCCCCTGGCTGTGCCGGTGGAGAAGCTGCTGAAAAAGCCCATGAAGAAGATGACG
CCGGAGCGGACCGGCCAGGTCTATGCCGGCCTCCACGCCTATGCCGGGAAGCCGGAAAACTTCGCCCCGGAGGTCCGCCA
GGCGCTCCAGAACCTCCCCCGCAGGTTCGACGGGCTGCTGCGGGAGATGGTCTGGGACGAGGCCCGCTTCATCTCGGACC
TGCCGGGAAAGAACAGCGGCCGGGAGGGACTGGGGGGCGGCGGCCGGAGCACGGCGGCCCTGGTGGACGCGGTGAGCCGG
GCCAAGCGGCGGGTCACCATCCAGTCCCCCTACCTGGTCATGCCCGAGGGGGGCGTGGAGCTGTTCCGGAAGCTGATCCG
GCGCGGGGTGGAGGTGCGGATCGTCACCAACTCCCTGGCCGCCACCGACAACCTCCAGGCCTTCAGCGGCTACCGGAAGC
AGCGCAACCGGCTCCTGAAGGCGGGGATCACCATCCGGGAATTCCGCCCGGACCCGGCCGTGCGGCAGGAGCTGATCGAC
CGCTACCCGAAGCTGAAGGAGAAGCCCCCCACCTTCGCCCTCCATGCAAAGACCATGGTGATCGACGGCGTGACTCTGTT
CGTCGGCACCTTCAACCTGGACCCCCGTTCCGCCAACCTGAACACCGAGGTGGGGGTGATGGTCCGCAACCCCGCCCTGG
CCCGCCAGGTGGAGGAGCGGATCGAGCGGGACATGCGCCCGGAGAACAGCTGGAATCCGGCCACGGACAACCCGGACCGC
CGCGCCTCGGCGGCCAAGCGGAACAGGCTGCGCCTCTGGAAGTCGCTGCCGCTGACCCCCATCCTCTGA

Upstream 100 bases:

>100_bases
TATTCGACAGAGAAATAAACTGTCCCCAAAACTGCCGAAACTGCTGCGGGACTGCCCTTTTTGCGCGCTCTTCCCGACAA
TTGAAACGAGGCTCTTTGTA

Downstream 100 bases:

>100_bases
AGATTCCGGGAATGTGACGTGATGTGAAGTGAGAAAATTCTCAAGGATGCCGTTTTTTTGCCGAAAAGAGAGTAATGATG
CGCGGTGCCGGAACCCGGCA

Product: phospholipase D/transphosphatidylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MIRPLLLITLSLLLILTAVPGARLSAAETTPVTLPLARSIQPLLSAHPGKTGLYVLEKGEESLLARAWLADHATKSIDVQ
YFIWSSDNIGILASEALLRAAERGIRVRVLVDDLLIDAPPESLLALARHPNIDIRIYNPKMTVGTSKVKRFANVVTGFRS
VNQRMHDKTALFDGMVGITGGRNMADEYYDFDQEYTFRDRDMLMLGPTVAEAEASFARFWESPLAVPVEKLLKKPMKKMT
PERTGQVYAGLHAYAGKPENFAPEVRQALQNLPRRFDGLLREMVWDEARFISDLPGKNSGREGLGGGGRSTAALVDAVSR
AKRRVTIQSPYLVMPEGGVELFRKLIRRGVEVRIVTNSLAATDNLQAFSGYRKQRNRLLKAGITIREFRPDPAVRQELID
RYPKLKEKPPTFALHAKTMVIDGVTLFVGTFNLDPRSANLNTEVGVMVRNPALARQVEERIERDMRPENSWNPATDNPDR
RASAAKRNRLRLWKSLPLTPIL

Sequences:

>Translated_502_residues
MIRPLLLITLSLLLILTAVPGARLSAAETTPVTLPLARSIQPLLSAHPGKTGLYVLEKGEESLLARAWLADHATKSIDVQ
YFIWSSDNIGILASEALLRAAERGIRVRVLVDDLLIDAPPESLLALARHPNIDIRIYNPKMTVGTSKVKRFANVVTGFRS
VNQRMHDKTALFDGMVGITGGRNMADEYYDFDQEYTFRDRDMLMLGPTVAEAEASFARFWESPLAVPVEKLLKKPMKKMT
PERTGQVYAGLHAYAGKPENFAPEVRQALQNLPRRFDGLLREMVWDEARFISDLPGKNSGREGLGGGGRSTAALVDAVSR
AKRRVTIQSPYLVMPEGGVELFRKLIRRGVEVRIVTNSLAATDNLQAFSGYRKQRNRLLKAGITIREFRPDPAVRQELID
RYPKLKEKPPTFALHAKTMVIDGVTLFVGTFNLDPRSANLNTEVGVMVRNPALARQVEERIERDMRPENSWNPATDNPDR
RASAAKRNRLRLWKSLPLTPIL
>Mature_502_residues
MIRPLLLITLSLLLILTAVPGARLSAAETTPVTLPLARSIQPLLSAHPGKTGLYVLEKGEESLLARAWLADHATKSIDVQ
YFIWSSDNIGILASEALLRAAERGIRVRVLVDDLLIDAPPESLLALARHPNIDIRIYNPKMTVGTSKVKRFANVVTGFRS
VNQRMHDKTALFDGMVGITGGRNMADEYYDFDQEYTFRDRDMLMLGPTVAEAEASFARFWESPLAVPVEKLLKKPMKKMT
PERTGQVYAGLHAYAGKPENFAPEVRQALQNLPRRFDGLLREMVWDEARFISDLPGKNSGREGLGGGGRSTAALVDAVSR
AKRRVTIQSPYLVMPEGGVELFRKLIRRGVEVRIVTNSLAATDNLQAFSGYRKQRNRLLKAGITIREFRPDPAVRQELID
RYPKLKEKPPTFALHAKTMVIDGVTLFVGTFNLDPRSANLNTEVGVMVRNPALARQVEERIERDMRPENSWNPATDNPDR
RASAAKRNRLRLWKSLPLTPIL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=433, Percent_Identity=35.3348729792148, Blast_Score=242, Evalue=4e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56160; Mature: 56160

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPLLLITLSLLLILTAVPGARLSAAETTPVTLPLARSIQPLLSAHPGKTGLYVLEKGE
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCC
ESLLARAWLADHATKSIDVQYFIWSSDNIGILASEALLRAAERGIRVRVLVDDLLIDAPP
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHCCCCH
ESLLALARHPNIDIRIYNPKMTVGTSKVKRFANVVTGFRSVNQRMHDKTALFDGMVGITG
HHHHHHHHCCCEEEEEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
GRNMADEYYDFDQEYTFRDRDMLMLGPTVAEAEASFARFWESPLAVPVEKLLKKPMKKMT
CCCCCHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PERTGQVYAGLHAYAGKPENFAPEVRQALQNLPRRFDGLLREMVWDEARFISDLPGKNSG
CCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
REGLGGGGRSTAALVDAVSRAKRRVTIQSPYLVMPEGGVELFRKLIRRGVEVRIVTNSLA
CCCCCCCCCHHHHHHHHHHHHHHEEEECCCEEEECCCHHHHHHHHHHCCCEEEEEECCHH
ATDNLQAFSGYRKQRNRLLKAGITIREFRPDPAVRQELIDRYPKLKEKPPTFALHAKTMV
CCCCHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEHEEE
IDGVTLFVGTFNLDPRSANLNTEVGVMVRNPALARQVEERIERDMRPENSWNPATDNPDR
ECCEEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
RASAAKRNRLRLWKSLPLTPIL
HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIRPLLLITLSLLLILTAVPGARLSAAETTPVTLPLARSIQPLLSAHPGKTGLYVLEKGE
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCC
ESLLARAWLADHATKSIDVQYFIWSSDNIGILASEALLRAAERGIRVRVLVDDLLIDAPP
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEHHHCCCCH
ESLLALARHPNIDIRIYNPKMTVGTSKVKRFANVVTGFRSVNQRMHDKTALFDGMVGITG
HHHHHHHHCCCEEEEEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
GRNMADEYYDFDQEYTFRDRDMLMLGPTVAEAEASFARFWESPLAVPVEKLLKKPMKKMT
CCCCCHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
PERTGQVYAGLHAYAGKPENFAPEVRQALQNLPRRFDGLLREMVWDEARFISDLPGKNSG
CCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
REGLGGGGRSTAALVDAVSRAKRRVTIQSPYLVMPEGGVELFRKLIRRGVEVRIVTNSLA
CCCCCCCCCHHHHHHHHHHHHHHEEEECCCEEEECCCHHHHHHHHHHCCCEEEEEECCHH
ATDNLQAFSGYRKQRNRLLKAGITIREFRPDPAVRQELIDRYPKLKEKPPTFALHAKTMV
CCCCHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEHEEE
IDGVTLFVGTFNLDPRSANLNTEVGVMVRNPALARQVEERIERDMRPENSWNPATDNPDR
ECCEEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
RASAAKRNRLRLWKSLPLTPIL
HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]