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The map label for this gene is ydfH [H]

Identifier: 78221289

GI number: 78221289

Start: 76634

End: 77338

Strand: Reverse

Name: ydfH [H]

Synonym: Gmet_0062

Alternate gene names: 78221289

Gene position: 77338-76634 (Counterclockwise)

Preceding gene: 78221292

Following gene: 78221288

Centisome position: 1.93

GC content: 59.29

Gene sequence:

>705_bases
ATGAAAAAAACGCTGGAAAAGCACCTGACCCTCAGGGAAAAGATACTCGAAACCATCCGCGACGCCATCATGACCGGCGC
GCTCAGGCCGGGGGAAAAGGTTGCCGAGCCCGACCTCGCCGAGCGTTTCGGCATCAGCCGCACCCCGATCCGCGAGGCGT
TCCGCCAGCTGGAGTCGGAAGGGTACCTGACCGTCATCCCCCGCAAGGGTGCTGTGGTAACGGCCTTCTCCCCCCGGGAT
GTGGAGGAATTTTACGCCATCAAGAGCATCCTCGAAGGGTATGCGGCCCGCCGGGCCTGCGAAAAACTCTCCTCGAAGGA
TATCGAGCGACTCCGCAACATCAATGACCGGCTTCGGCACATGGCCGACGACGGTGACATCAAGCACTTCTTTCGAATCC
ATAATGACTTTCACGATCTTTTCCTCAAGGCAGCCGACAACGAAAAGCTCTACGAACTGATTACAAACCTCGTTCGCAAG
TTCCAGCGCCTGCGCTACGCGTCCCTGAGCCTACCCGGACGGATGAAGATATCGGTGCAGGAGCACGATAAAATCATCGA
GGCTTTCCTCAAGCGGGACCCGGACAAGGCCGAAGTTCTCGTCCGGAAAAACGCCGAGTACGGCGGCAAGGTCCTCATGC
AGAACGACGGAGCGCCTCCCCTCAAGCCGGCGGAGCGCGCAGCCGCCCTCCATCTCGACCTCTAA

Upstream 100 bases:

>100_bases
GAACCGCTCTTTTTTCTTTTTTTTAGGCCATGTTAACTCCTGCTTGACAATTCTTGTATACTGTATACAATAAGCAAGCA
CCCCCTACCGGAGTGATTCA

Downstream 100 bases:

>100_bases
CACTTCCTTTTCCCTGTCACGGGGCGGCCTTGACAGGCCGGCATCGATCTGGTAGTGAGGTTTCTCGTTCCACAACCTCC
ACCTCCCCAGACAGAGGACG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MKKTLEKHLTLREKILETIRDAIMTGALRPGEKVAEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVTAFSPRD
VEEFYAIKSILEGYAARRACEKLSSKDIERLRNINDRLRHMADDGDIKHFFRIHNDFHDLFLKAADNEKLYELITNLVRK
FQRLRYASLSLPGRMKISVQEHDKIIEAFLKRDPDKAEVLVRKNAEYGGKVLMQNDGAPPLKPAERAAALHLDL

Sequences:

>Translated_234_residues
MKKTLEKHLTLREKILETIRDAIMTGALRPGEKVAEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVTAFSPRD
VEEFYAIKSILEGYAARRACEKLSSKDIERLRNINDRLRHMADDGDIKHFFRIHNDFHDLFLKAADNEKLYELITNLVRK
FQRLRYASLSLPGRMKISVQEHDKIIEAFLKRDPDKAEVLVRKNAEYGGKVLMQNDGAPPLKPAERAAALHLDL
>Mature_234_residues
MKKTLEKHLTLREKILETIRDAIMTGALRPGEKVAEPDLAERFGISRTPIREAFRQLESEGYLTVIPRKGAVVTAFSPRD
VEEFYAIKSILEGYAARRACEKLSSKDIERLRNINDRLRHMADDGDIKHFFRIHNDFHDLFLKAADNEKLYELITNLVRK
FQRLRYASLSLPGRMKISVQEHDKIIEAFLKRDPDKAEVLVRKNAEYGGKVLMQNDGAPPLKPAERAAALHLDL

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=27.6381909547739, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87081914, Length=191, Percent_Identity=26.1780104712042, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26891; Mature: 26891

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLEKHLTLREKILETIRDAIMTGALRPGEKVAEPDLAERFGISRTPIREAFRQLESE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCC
GYLTVIPRKGAVVTAFSPRDVEEFYAIKSILEGYAARRACEKLSSKDIERLRNINDRLRH
CCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MADDGDIKHFFRIHNDFHDLFLKAADNEKLYELITNLVRKFQRLRYASLSLPGRMKISVQ
HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
EHDKIIEAFLKRDPDKAEVLVRKNAEYGGKVLMQNDGAPPLKPAERAAALHLDL
HHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKKTLEKHLTLREKILETIRDAIMTGALRPGEKVAEPDLAERFGISRTPIREAFRQLESE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCC
GYLTVIPRKGAVVTAFSPRDVEEFYAIKSILEGYAARRACEKLSSKDIERLRNINDRLRH
CCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MADDGDIKHFFRIHNDFHDLFLKAADNEKLYELITNLVRKFQRLRYASLSLPGRMKISVQ
HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHH
EHDKIIEAFLKRDPDKAEVLVRKNAEYGGKVLMQNDGAPPLKPAERAAALHLDL
HHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]