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The map label for this gene is pqqE [H]

Identifier: 78221243

GI number: 78221243

Start: 22139

End: 23209

Strand: Direct

Name: pqqE [H]

Synonym: Gmet_0015

Alternate gene names: 78221243

Gene position: 22139-23209 (Clockwise)

Preceding gene: 78221242

Following gene: 78221244

Centisome position: 0.55

GC content: 60.88

Gene sequence:

>1071_bases
ATGGCTGAAGAATTCATACCCAAATGGGTTGCCTGGGAAACCACCCAGAAGTGCAACCTCAAGTGCGTCCACTGCCGCTG
TTCCTCTGACCTGACCTCTTCCGAGGGGGATTTCACCACCGAGGAGGGAAAGAAGCTCCTGAAGGAGATCGCTGACTTCT
CCAAACCGGTGATCGTCCTCTCCGGCGGCGAGCCCCTCATGCGCAAGGACATCTTCGAGCTGGCCGAGTACGGCACCTCC
CTGGGGCTGCGCATGTGCATGGCCACCAACGGCGCCCTGGTCACCGACGAGATCTGCCAGAAGATGCGCAAGGCCGACAT
CAAGATGGTGTCGCTTTCCCTGGACGGCAGCACCGCCGCGGTCCACGACGACTTCCGCCAGTGCCCCGGCGCCTTCGAAG
GGGTAGTGCGGGCCGCGGAGATCTTCCGGCGCAACGGCCAGAAATTCCTCATCAACTCCTCCTTCACCAAGCGCAACCAG
CACGACATCGCCAACACCTTCAAGCTGGCCAAGAGCCTCGGCGCCACCGCCTGGTACATGTTCATGATCGTTCCCACGGG
GCGCGGCGAGGAGATCATGAACGAGCTCATCACCAAGGAGGACTACGAGGAGATTCTGGAGTGGCACTACCAGCAGGAGA
AGCTGGAGGACGAGATCCTCATGCGTCCCACCTGTGCCCCCCACTACTACCGGATGGTCCCCATGCGGGCGAAAGAAGAA
GGGGTCAAGTTCGAGCGCCGGTCGCTGACCTTCTCCACCGGCGGCGGCAAGGGGTGCATTGCGGCCCAGACCATCTGCCT
CATCGACTGCTTCGGCAACGTGAAACCCTGCTCCTACTTCCACCGCACCGCCGGCAACGTGAAGGAGACCCCCTTCCGGG
AGATCTGGGAGAATTCGGAGATCTTCAAGGATCTCAGGAACTTCAAGGCCTACAAGGGGAAGTGCGGCGAGTGCGAGTTT
CTCAATGTCTGCGGCGGGTGCCGGGCCAGGGCCGATGCGGTGCATGGGGATTACATGGCGGAAGAGCCGTTCTGTAATTA
TGTGCCGATACGCCTTCAAAAGAAGGCGTAG

Upstream 100 bases:

>100_bases
AGATGGCGGAGTAGCCTCTATCTGCGCGGAGCTAAACTTCTTGTGCTGCCGGCGTTATTCATAGTAGGATTTATAAGATT
GACATACGAACGGAGAACCC

Downstream 100 bases:

>100_bases
GGAGGAACGTGCTCTTTACGCCATCTTGGCGCCGTCCTCGTCACCCCGTTGTGCGGCGTAGCTGGGCTACGCCTCCGCCG
GGGTTCCTGCGGGTGCACCA

Product: radical SAM family protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MAEEFIPKWVAWETTQKCNLKCVHCRCSSDLTSSEGDFTTEEGKKLLKEIADFSKPVIVLSGGEPLMRKDIFELAEYGTS
LGLRMCMATNGALVTDEICQKMRKADIKMVSLSLDGSTAAVHDDFRQCPGAFEGVVRAAEIFRRNGQKFLINSSFTKRNQ
HDIANTFKLAKSLGATAWYMFMIVPTGRGEEIMNELITKEDYEEILEWHYQQEKLEDEILMRPTCAPHYYRMVPMRAKEE
GVKFERRSLTFSTGGGKGCIAAQTICLIDCFGNVKPCSYFHRTAGNVKETPFREIWENSEIFKDLRNFKAYKGKCGECEF
LNVCGGCRARADAVHGDYMAEEPFCNYVPIRLQKKA

Sequences:

>Translated_356_residues
MAEEFIPKWVAWETTQKCNLKCVHCRCSSDLTSSEGDFTTEEGKKLLKEIADFSKPVIVLSGGEPLMRKDIFELAEYGTS
LGLRMCMATNGALVTDEICQKMRKADIKMVSLSLDGSTAAVHDDFRQCPGAFEGVVRAAEIFRRNGQKFLINSSFTKRNQ
HDIANTFKLAKSLGATAWYMFMIVPTGRGEEIMNELITKEDYEEILEWHYQQEKLEDEILMRPTCAPHYYRMVPMRAKEE
GVKFERRSLTFSTGGGKGCIAAQTICLIDCFGNVKPCSYFHRTAGNVKETPFREIWENSEIFKDLRNFKAYKGKCGECEF
LNVCGGCRARADAVHGDYMAEEPFCNYVPIRLQKKA
>Mature_355_residues
AEEFIPKWVAWETTQKCNLKCVHCRCSSDLTSSEGDFTTEEGKKLLKEIADFSKPVIVLSGGEPLMRKDIFELAEYGTSL
GLRMCMATNGALVTDEICQKMRKADIKMVSLSLDGSTAAVHDDFRQCPGAFEGVVRAAEIFRRNGQKFLINSSFTKRNQH
DIANTFKLAKSLGATAWYMFMIVPTGRGEEIMNELITKEDYEEILEWHYQQEKLEDEILMRPTCAPHYYRMVPMRAKEEG
VKFERRSLTFSTGGGKGCIAAQTICLIDCFGNVKPCSYFHRTAGNVKETPFREIWENSEIFKDLRNFKAYKGKCGECEFL
NVCGGCRARADAVHGDYMAEEPFCNYVPIRLQKKA

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 40415; Mature: 40284

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEFIPKWVAWETTQKCNLKCVHCRCSSDLTSSEGDFTTEEGKKLLKEIADFSKPVIVL
CCCHHCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
SGGEPLMRKDIFELAEYGTSLGLRMCMATNGALVTDEICQKMRKADIKMVSLSLDGSTAA
ECCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEHHHHHHHHHHCCEEEEEEEECCCCHH
VHDDFRQCPGAFEGVVRAAEIFRRNGQKFLINSSFTKRNQHDIANTFKLAKSLGATAWYM
HHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
FMIVPTGRGEEIMNELITKEDYEEILEWHYQQEKLEDEILMRPTCAPHYYRMVPMRAKEE
EEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHC
GVKFERRSLTFSTGGGKGCIAAQTICLIDCFGNVKPCSYFHRTAGNVKETPFREIWENSE
CCCEEHHEEEEECCCCCCCHHHHHHHEEECCCCCCCHHHHHHHCCCCCCCCHHHHHCCHH
IFKDLRNFKAYKGKCGECEFLNVCGGCRARADAVHGDYMAEEPFCNYVPIRLQKKA
HHHHHHHHHHHCCCCCCEEEEHHCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure 
AEEFIPKWVAWETTQKCNLKCVHCRCSSDLTSSEGDFTTEEGKKLLKEIADFSKPVIVL
CCHHCCHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
SGGEPLMRKDIFELAEYGTSLGLRMCMATNGALVTDEICQKMRKADIKMVSLSLDGSTAA
ECCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEHHHHHHHHHHCCEEEEEEEECCCCHH
VHDDFRQCPGAFEGVVRAAEIFRRNGQKFLINSSFTKRNQHDIANTFKLAKSLGATAWYM
HHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
FMIVPTGRGEEIMNELITKEDYEEILEWHYQQEKLEDEILMRPTCAPHYYRMVPMRAKEE
EEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHC
GVKFERRSLTFSTGGGKGCIAAQTICLIDCFGNVKPCSYFHRTAGNVKETPFREIWENSE
CCCEEHHEEEEECCCCCCCHHHHHHHEEECCCCCCCHHHHHHHCCCCCCCCHHHHHCCHH
IFKDLRNFKAYKGKCGECEFLNVCGGCRARADAVHGDYMAEEPFCNYVPIRLQKKA
HHHHHHHHHHHCCCCCCEEEEHHCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]