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The map label for this gene is nodJ [H]

Identifier: 78221242

GI number: 78221242

Start: 21297

End: 22052

Strand: Direct

Name: nodJ [H]

Synonym: Gmet_0014

Alternate gene names: 78221242

Gene position: 21297-22052 (Clockwise)

Preceding gene: 78221241

Following gene: 78221243

Centisome position: 0.53

GC content: 66.67

Gene sequence:

>756_bases
GTGTTCAAGGGTGCCTTCTCCATCTGGAAGCGGGACATGCTGGTGCTCCGCCGCAGCCTCTTCTCTGAGCTCGTGGCGGT
GGTGGCGTCCCCCCTCACCTTCTACCTGGCCTTCGGCTTCGGCCTCCGGGGGTACATCGCCGACGTGGAGGGGGTTCCCT
ACACCGTCTTCATGGCGCCGGGGCTCATCACCATGACCGCCGTGTCGGCCGCCTTCGACGAGAGCGCCTGGAGCATGTGG
TTCCACCGCAAGGTGCAGCGCACCATCGAGGCCTACCGGGTCACCCCCATCACGGTCTACGACATCGTCATCGGCAAGAT
CATCTCCGGCTTCAGCCAGGGGGCCCTCAAGGGGGTGGCGGTGGCCACCGTGATCTTCCTCCTGACCGGGGTCCGGTTCG
ACCCGGCCCACCTGGCCGGATACCTCGCCTTCATCGTCCTCGGCTCCATGGTCTTTTCCTGCGCCGGCACCGTCTGCGGA
ACCCTCCTGGACAAGCCCGAGACCATCGGCAAGGTCCAGGCGGTGGTCATCATGCCCCTCATCTTCCTCTCCGGGGTCTT
CTTCCCCGTCTCCTCCTATCCCGAGGCCATGCGTTCCGCCGTCATGCTCATCCCCACCACGGCCCTCTTCGAGGGGTCGC
GCCGGGCGCTCCTGGCGGGTGCCTTCGACGGAGGGCTCATCGGCATCCTCGCCGTGACCGCCCTGGTCGCCTTTGCCGCC
ACGGTGGCCATCTTCAACCGGAAGATGGCGGAGTAG

Upstream 100 bases:

>100_bases
TGGACGCCATCGGCACCGACGACATCCGCACGATCTGTCTCCGGGAGCCGACCCTGGAGGATGTGTTCATCGAGCTGACG
GGGAAAGAGGTGCGGGAATA

Downstream 100 bases:

>100_bases
CCTCTATCTGCGCGGAGCTAAACTTCTTGTGCTGCCGGCGTTATTCATAGTAGGATTTATAAGATTGACATACGAACGGA
GAACCCATGGCTGAAGAATT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MFKGAFSIWKRDMLVLRRSLFSELVAVVASPLTFYLAFGFGLRGYIADVEGVPYTVFMAPGLITMTAVSAAFDESAWSMW
FHRKVQRTIEAYRVTPITVYDIVIGKIISGFSQGALKGVAVATVIFLLTGVRFDPAHLAGYLAFIVLGSMVFSCAGTVCG
TLLDKPETIGKVQAVVIMPLIFLSGVFFPVSSYPEAMRSAVMLIPTTALFEGSRRALLAGAFDGGLIGILAVTALVAFAA
TVAIFNRKMAE

Sequences:

>Translated_251_residues
MFKGAFSIWKRDMLVLRRSLFSELVAVVASPLTFYLAFGFGLRGYIADVEGVPYTVFMAPGLITMTAVSAAFDESAWSMW
FHRKVQRTIEAYRVTPITVYDIVIGKIISGFSQGALKGVAVATVIFLLTGVRFDPAHLAGYLAFIVLGSMVFSCAGTVCG
TLLDKPETIGKVQAVVIMPLIFLSGVFFPVSSYPEAMRSAVMLIPTTALFEGSRRALLAGAFDGGLIGILAVTALVAFAA
TVAIFNRKMAE
>Mature_251_residues
MFKGAFSIWKRDMLVLRRSLFSELVAVVASPLTFYLAFGFGLRGYIADVEGVPYTVFMAPGLITMTAVSAAFDESAWSMW
FHRKVQRTIEAYRVTPITVYDIVIGKIISGFSQGALKGVAVATVIFLLTGVRFDPAHLAGYLAFIVLGSMVFSCAGTVCG
TLLDKPETIGKVQAVVIMPLIFLSGVFFPVSSYPEAMRSAVMLIPTTALFEGSRRALLAGAFDGGLIGILAVTALVAFAA
TVAIFNRKMAE

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=216, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 26992; Mature: 26992

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3019841; 3419422 [H]