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The map label for this gene is aam1 [H]

Identifier: 78189937

GI number: 78189937

Start: 2519000

End: 2521015

Strand: Reverse

Name: aam1 [H]

Synonym: Cag_1984

Alternate gene names: 78189937

Gene position: 2521015-2519000 (Counterclockwise)

Preceding gene: 78189938

Following gene: 78189936

Centisome position: 98.01

GC content: 47.47

Gene sequence:

>2016_bases
ATGACCTTACATTCTACCTTCGAGCACACATTGCCCTTATTTTGCCAGCAGGCGTTTGACGGTCGTCAGCGGGTTATTAT
TGAAAATATTTCACCTGAAATTGATGGTGGTAGCCATCCCGCAAAAGCGGTTGCGGGCGAGCTTGTTGAGGTTGAGGCTG
ATATTTTTGTGGATGGTGCCGATACCATTTCGGCAATGTTGTGCGCTCGTCCTATGGGGAGTAGCGAATGGCAGCAAAGC
GCTATGCAGCCTTTAGTAAACGACCGATGGCAGGGGGCGTTCCGTGTGGGCGAAGCGGGCGTGTTTGAATATACCATTAC
GGCATGGGTTGACCATTTTCAAACGTGGCGTAAGGGATTTATTAAAAAAGTTGATGCAGGGCAGAATGTTTCTTTGGAGT
TGCAAATAGGTACTATTCACCTTGAAAAAGCGGCGCTCCGTGCCACTAAAAGCGATGCTGAGCTGCTTCATGTGTTGGTG
CAGCGAATTAGCACCGCCGATGATGCTGAGGCAATTGCGTTAATCACCTCTGATGCGCTTGCTCAAGTAATGGAGCGCAA
CCCCGATACGTCGTTAGCAACAACATACCAAAAAGTGCTACGCGTAACGGTTGAGCAAACCAAAGCGGGATGCAGTGCGT
GGTATGAATTTTTCCCACGCTCGTGGTCTGAAATTCCCGGCAAGCATGGCACCTTTAACGAGTGCCTCCGCTTGTTGCCA
CTTATTGCAGGCATGGGCTTCGATGTTATTTACCTTCCCCCTATTCATCCCATTGGCTACGCTAAACGCAAAGGGCGCAA
TAATTCGCTTGTTGCGTTGCCCGATGATCCCGGTAGTTGCTGGGCAATTGGCAATAGCGATGGTGGGCATAAAGCGGTTC
ATCCCGAACTTGGCACGCTGGAGGACTTTACTGCTTTTGTGCAAGCGGCTGAGGCGCAAGGTATTTCGGTGGCGCTCGAT
ATTGCATTCCAATGCTCACCCGATCACCCTTACGTTCAAGAGCATCCACAGTGGTTTACATGGCGCCCCGATGGCACGGT
GCAGTTTGCTGAAAATCCGCCGAAGCGCTATGAAGATATTCTTCCCATCAATTTTGAAAATGATGATTGGCAAAATCTCT
GGATTGAGTTGCGGAGCATTTTCCTCTTTTGGGTTGAACGAGGCGTAAAAATTTTCCGTGTGGACAACCCTCATACCAAA
GCATTTCCATTTTGGGAATGGGCAATTCGTACCATTAGAGCTGAGCACCCCGACACCGTATTTCTTGCAGAAGCCTTTAC
GCGCCCTAAGCTTATGGCGCGCTTAGCAAAAATCGGTTATAGCCAATCCTACAGCTACTTTACATGGCGTAACACGAAGC
ATGAGTTGCAGGAGTATGTAACGGAACTCACTTCCGAGCCATTAAAGCATGTTATGCGTGCCAACTTTTGGCCAAACACG
CCCGATATTTTGCATGATGAGTTCCATAATGGCGAGCGCGAAAAGTTCATTATTCGCCTTGTGCTTGCCGCTACACTTTC
AGCAAATTATGGCATGTATGGACCAGCGTATGAATTGTGCGAGCATGTGCCGATAGCGCATGGTAAAGAGGAGTATCTTG
ATTCCGAGAAGTATGAAATTAAGCAGTGGGATATGGATCGTCCGGGCAACATTCGGGCTGAAATTACGGCAATCAATCGT
ATTCGTAAAGAGAATCCCGCTTTGCAGCAAACCGCTGATATTAGCTTTTTGCACATTGATGCCTCTCCCGGTAATGAGCA
CAATATGCTGATGGCATACGTCAAACGTTCCGAGAATGATGCCAATATCATTTTAGTGGTTGTGAATCTTGATCCTATTA
CCACACAACGTGGATGGCTTCGCTTTCCGTTAGAGCAATTTGGATTAACGCATTTACACCGTTTTCATGTTGAGGATTTG
CTGAGTGGGCAGTGCCATACATGGCATGGCGAGTGGAATTATGTGGAATTAAATCCTCATGTTATGCCTGCTCATATTTT
TAAAATTTCGCTTTAA

Upstream 100 bases:

>100_bases
TTCTATTTTCCGTTTCTTTTTGCCTTGTGGCTGCAAGTTTACAGTTGCCAACAAACTCCCTCATTGCGGCGGAACTTTCC
GACGCCAAAGCACCATACTC

Downstream 100 bases:

>100_bases
GAGACTTCGTGTCGAGTTCAAGTGTAGGCTGAATTTCTAAGAAACTTCTTTTATCGCGTTAGTTTCTCAATAAGTTATTT
TAAAGTTTGCTTATCAAAGC

Product: alpha amylase domain-containing protein

Products: D-Glucose 6-phosphate; D-Glucose [C]

Alternate protein names: NA

Number of amino acids: Translated: 671; Mature: 670

Protein sequence:

>671_residues
MTLHSTFEHTLPLFCQQAFDGRQRVIIENISPEIDGGSHPAKAVAGELVEVEADIFVDGADTISAMLCARPMGSSEWQQS
AMQPLVNDRWQGAFRVGEAGVFEYTITAWVDHFQTWRKGFIKKVDAGQNVSLELQIGTIHLEKAALRATKSDAELLHVLV
QRISTADDAEAIALITSDALAQVMERNPDTSLATTYQKVLRVTVEQTKAGCSAWYEFFPRSWSEIPGKHGTFNECLRLLP
LIAGMGFDVIYLPPIHPIGYAKRKGRNNSLVALPDDPGSCWAIGNSDGGHKAVHPELGTLEDFTAFVQAAEAQGISVALD
IAFQCSPDHPYVQEHPQWFTWRPDGTVQFAENPPKRYEDILPINFENDDWQNLWIELRSIFLFWVERGVKIFRVDNPHTK
AFPFWEWAIRTIRAEHPDTVFLAEAFTRPKLMARLAKIGYSQSYSYFTWRNTKHELQEYVTELTSEPLKHVMRANFWPNT
PDILHDEFHNGEREKFIIRLVLAATLSANYGMYGPAYELCEHVPIAHGKEEYLDSEKYEIKQWDMDRPGNIRAEITAINR
IRKENPALQQTADISFLHIDASPGNEHNMLMAYVKRSENDANIILVVVNLDPITTQRGWLRFPLEQFGLTHLHRFHVEDL
LSGQCHTWHGEWNYVELNPHVMPAHIFKISL

Sequences:

>Translated_671_residues
MTLHSTFEHTLPLFCQQAFDGRQRVIIENISPEIDGGSHPAKAVAGELVEVEADIFVDGADTISAMLCARPMGSSEWQQS
AMQPLVNDRWQGAFRVGEAGVFEYTITAWVDHFQTWRKGFIKKVDAGQNVSLELQIGTIHLEKAALRATKSDAELLHVLV
QRISTADDAEAIALITSDALAQVMERNPDTSLATTYQKVLRVTVEQTKAGCSAWYEFFPRSWSEIPGKHGTFNECLRLLP
LIAGMGFDVIYLPPIHPIGYAKRKGRNNSLVALPDDPGSCWAIGNSDGGHKAVHPELGTLEDFTAFVQAAEAQGISVALD
IAFQCSPDHPYVQEHPQWFTWRPDGTVQFAENPPKRYEDILPINFENDDWQNLWIELRSIFLFWVERGVKIFRVDNPHTK
AFPFWEWAIRTIRAEHPDTVFLAEAFTRPKLMARLAKIGYSQSYSYFTWRNTKHELQEYVTELTSEPLKHVMRANFWPNT
PDILHDEFHNGEREKFIIRLVLAATLSANYGMYGPAYELCEHVPIAHGKEEYLDSEKYEIKQWDMDRPGNIRAEITAINR
IRKENPALQQTADISFLHIDASPGNEHNMLMAYVKRSENDANIILVVVNLDPITTQRGWLRFPLEQFGLTHLHRFHVEDL
LSGQCHTWHGEWNYVELNPHVMPAHIFKISL
>Mature_670_residues
TLHSTFEHTLPLFCQQAFDGRQRVIIENISPEIDGGSHPAKAVAGELVEVEADIFVDGADTISAMLCARPMGSSEWQQSA
MQPLVNDRWQGAFRVGEAGVFEYTITAWVDHFQTWRKGFIKKVDAGQNVSLELQIGTIHLEKAALRATKSDAELLHVLVQ
RISTADDAEAIALITSDALAQVMERNPDTSLATTYQKVLRVTVEQTKAGCSAWYEFFPRSWSEIPGKHGTFNECLRLLPL
IAGMGFDVIYLPPIHPIGYAKRKGRNNSLVALPDDPGSCWAIGNSDGGHKAVHPELGTLEDFTAFVQAAEAQGISVALDI
AFQCSPDHPYVQEHPQWFTWRPDGTVQFAENPPKRYEDILPINFENDDWQNLWIELRSIFLFWVERGVKIFRVDNPHTKA
FPFWEWAIRTIRAEHPDTVFLAEAFTRPKLMARLAKIGYSQSYSYFTWRNTKHELQEYVTELTSEPLKHVMRANFWPNTP
DILHDEFHNGEREKFIIRLVLAATLSANYGMYGPAYELCEHVPIAHGKEEYLDSEKYEIKQWDMDRPGNIRAEITAINRI
RKENPALQQTADISFLHIDASPGNEHNMLMAYVKRSENDANIILVVVNLDPITTQRGWLRFPLEQFGLTHLHRFHVEDLL
SGQCHTWHGEWNYVELNPHVMPAHIFKISL

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021828
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF11896 DUF3416 [H]

EC number: 3.2.1.93 [C]

Molecular weight: Translated: 76504; Mature: 76373

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHSTFEHTLPLFCQQAFDGRQRVIIENISPEIDGGSHPAKAVAGELVEVEADIFVDGA
CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHCHHEEEEEEEEECCH
DTISAMLCARPMGSSEWQQSAMQPLVNDRWQGAFRVGEAGVFEYTITAWVDHFQTWRKGF
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHH
IKKVDAGQNVSLELQIGTIHLEKAALRATKSDAELLHVLVQRISTADDAEAIALITSDAL
HEECCCCCCEEEEEEEEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHH
AQVMERNPDTSLATTYQKVLRVTVEQTKAGCSAWYEFFPRSWSEIPGKHGTFNECLRLLP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH
LIAGMGFDVIYLPPIHPIGYAKRKGRNNSLVALPDDPGSCWAIGNSDGGHKAVHPELGTL
HHHCCCCCEEEECCCCCCCCHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCH
EDFTAFVQAAEAQGISVALDIAFQCSPDHPYVQEHPQWFTWRPDGTVQFAENPPKRYEDI
HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHCCCCEEEECCCCCEEECCCCCHHHHCC
LPINFENDDWQNLWIELRSIFLFWVERGVKIFRVDNPHTKAFPFWEWAIRTIRAEHPDTV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
FLAEAFTRPKLMARLAKIGYSQSYSYFTWRNTKHELQEYVTELTSEPLKHVMRANFWPNT
EEEHHHCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDILHDEFHNGEREKFIIRLVLAATLSANYGMYGPAYELCEHVPIAHGKEEYLDSEKYEI
CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHCCCCCCCC
KQWDMDRPGNIRAEITAINRIRKENPALQQTADISFLHIDASPGNEHNMLMAYVKRSEND
EECCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCEEEEEEECCCCCCCCEEEEEEECCCCC
ANIILVVVNLDPITTQRGWLRFPLEQFGLTHLHRFHVEDLLSGQCHTWHGEWNYVELNPH
CEEEEEEEECCCCCCCCCCEECCHHHCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCC
VMPAHIFKISL
EEEEEEEEECC
>Mature Secondary Structure 
TLHSTFEHTLPLFCQQAFDGRQRVIIENISPEIDGGSHPAKAVAGELVEVEADIFVDGA
CCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHCHHEEEEEEEEECCH
DTISAMLCARPMGSSEWQQSAMQPLVNDRWQGAFRVGEAGVFEYTITAWVDHFQTWRKGF
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHH
IKKVDAGQNVSLELQIGTIHLEKAALRATKSDAELLHVLVQRISTADDAEAIALITSDAL
HEECCCCCCEEEEEEEEEEEEHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEHHHH
AQVMERNPDTSLATTYQKVLRVTVEQTKAGCSAWYEFFPRSWSEIPGKHGTFNECLRLLP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH
LIAGMGFDVIYLPPIHPIGYAKRKGRNNSLVALPDDPGSCWAIGNSDGGHKAVHPELGTL
HHHCCCCCEEEECCCCCCCCHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCH
EDFTAFVQAAEAQGISVALDIAFQCSPDHPYVQEHPQWFTWRPDGTVQFAENPPKRYEDI
HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHCCCCEEEECCCCCEEECCCCCHHHHCC
LPINFENDDWQNLWIELRSIFLFWVERGVKIFRVDNPHTKAFPFWEWAIRTIRAEHPDTV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
FLAEAFTRPKLMARLAKIGYSQSYSYFTWRNTKHELQEYVTELTSEPLKHVMRANFWPNT
EEEHHHCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDILHDEFHNGEREKFIIRLVLAATLSANYGMYGPAYELCEHVPIAHGKEEYLDSEKYEI
CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHCCCCCCCC
KQWDMDRPGNIRAEITAINRIRKENPALQQTADISFLHIDASPGNEHNMLMAYVKRSEND
EECCCCCCCCCEEEEHHHHHHHHCCCCHHHHCCEEEEEEECCCCCCCCEEEEEEECCCCC
ANIILVVVNLDPITTQRGWLRFPLEQFGLTHLHRFHVEDLLSGQCHTWHGEWNYVELNPH
CEEEEEEEECCCCCCCCCCEECCHHHCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECCC
VMPAHIFKISL
EEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; alpha,alpha'-Trehalose 6-phosphate [C]

Specific reaction: H2O + alpha,alpha'-Trehalose 6-phosphate --> D-Glucose 6-phosphate + D-Glucose [C]

General reaction: O-Glycosyl bond hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10970853 [H]