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The map label for this gene is 78189938

Identifier: 78189938

GI number: 78189938

Start: 2521259

End: 2522191

Strand: Reverse

Name: 78189938

Synonym: Cag_1985

Alternate gene names: NA

Gene position: 2522191-2521259 (Counterclockwise)

Preceding gene: 78189939

Following gene: 78189937

Centisome position: 98.06

GC content: 39.87

Gene sequence:

>933_bases
ATGGTAAACAACAGAGATTTAAGCCTCACCCGAATTGGAGTCTTTTATGATGGCAATTATTTTCTTCATATCAGTAACTA
CTACAATTACTTTCATGAAAGAAAAGCCCGCATTAGTATTTCAGGACTTCACCATTTTGTACGCAACTACATAGCCCAAC
AAGAAGGCTCTGACGAACAACTCTGCCAAATTGTTGATGCTCACTACTTTCGTGGACGCTTAAACGCCTACGAAGCCGCC
CAAGAAGGTAACGCCCTTTTCTACGATCGCTTATTTGACGACATCTTAAGTTCCGAAGGCGTTACCACTCATTATCTTCC
CGTTAAAACATCGCAAACAGGCGTTCGCTACGAAAAAGGTATTGATGTATGGCTTGCTTTAGAAGCGTTTGAGCAAGCGT
TTTATAAACGTTTTGATGTGCTGGTTTTAATAGCTTCGGATGGCGATTATGTGCCTCTTATTCGGAAATTAAACACGCTT
GGTACGCGTGTTATGGTATTAAGTTGGGATTTTGAATATACCAGCGATAACGGCAAGCAAATGACCACGCGCACCTCGCA
AGATTTACTCGAAGAGGTTACCTATCCTGTTGCTATGCACGAAATTATTGATAACCGCATTAAAAAGAATGAGCCGCTTA
TTAATAATCTCTTTGTGCCACCATCAAAAAAGCGAATCTTTGAAAAACCTTTAGATCGCGAATATGATGAATCGGAACAG
CAAACAGGAACAATTCTTGCGTTAAAAGATGGCTATGGATTTATCAAGTTCCCGCCAAATAATCTGTTTTTCCACTATTC
TAATCTTAATGGCGTTGATTTCAACGATTTAAAAGTAGATGATGCTGTGCAGTTTGTTATTGGCAAGAATGATCGTGGCG
ATGAAGTAGCAAAGGATATTGTGTTGGTTGCTGAAGAGTCAGCAATTTCTTGA

Upstream 100 bases:

>100_bases
CTGATTGGTCAGAAGCAAAAGAACGTATAAGAAAAAGTTGCTATAACTTTTAATCAAGATAAAACAAACACATAACACAT
CCTTAACTATAAATACTATT

Downstream 100 bases:

>100_bases
GATCGTATCGTAGTGTAGTACACATGCAATTACGCCAAAAACAGCTTTTTGCGGTAAGAAATCAACCATGCAAGAGAGCC
TTGCGCCTCTTGAGCTAAGA

Product: cold shock protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MVNNRDLSLTRIGVFYDGNYFLHISNYYNYFHERKARISISGLHHFVRNYIAQQEGSDEQLCQIVDAHYFRGRLNAYEAA
QEGNALFYDRLFDDILSSEGVTTHYLPVKTSQTGVRYEKGIDVWLALEAFEQAFYKRFDVLVLIASDGDYVPLIRKLNTL
GTRVMVLSWDFEYTSDNGKQMTTRTSQDLLEEVTYPVAMHEIIDNRIKKNEPLINNLFVPPSKKRIFEKPLDREYDESEQ
QTGTILALKDGYGFIKFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGDEVAKDIVLVAEESAIS

Sequences:

>Translated_310_residues
MVNNRDLSLTRIGVFYDGNYFLHISNYYNYFHERKARISISGLHHFVRNYIAQQEGSDEQLCQIVDAHYFRGRLNAYEAA
QEGNALFYDRLFDDILSSEGVTTHYLPVKTSQTGVRYEKGIDVWLALEAFEQAFYKRFDVLVLIASDGDYVPLIRKLNTL
GTRVMVLSWDFEYTSDNGKQMTTRTSQDLLEEVTYPVAMHEIIDNRIKKNEPLINNLFVPPSKKRIFEKPLDREYDESEQ
QTGTILALKDGYGFIKFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGDEVAKDIVLVAEESAIS
>Mature_310_residues
MVNNRDLSLTRIGVFYDGNYFLHISNYYNYFHERKARISISGLHHFVRNYIAQQEGSDEQLCQIVDAHYFRGRLNAYEAA
QEGNALFYDRLFDDILSSEGVTTHYLPVKTSQTGVRYEKGIDVWLALEAFEQAFYKRFDVLVLIASDGDYVPLIRKLNTL
GTRVMVLSWDFEYTSDNGKQMTTRTSQDLLEEVTYPVAMHEIIDNRIKKNEPLINNLFVPPSKKRIFEKPLDREYDESEQ
QTGTILALKDGYGFIKFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGDEVAKDIVLVAEESAIS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35794; Mature: 35794

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNRDLSLTRIGVFYDGNYFLHISNYYNYFHERKARISISGLHHFVRNYIAQQEGSDEQ
CCCCCCEEEEEEEEEECCCEEEEEHHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCHHH
LCQIVDAHYFRGRLNAYEAAQEGNALFYDRLFDDILSSEGVTTHYLPVKTSQTGVRYEKG
HHHHHHHHHHHCCCCHHHHHHCCCEEEHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCC
IDVWLALEAFEQAFYKRFDVLVLIASDGDYVPLIRKLNTLGTRVMVLSWDFEYTSDNGKQ
CCEEEHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEEEECCCCCE
MTTRTSQDLLEEVTYPVAMHEIIDNRIKKNEPLINNLFVPPSKKRIFEKPLDREYDESEQ
EEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHCCCCCCCCCCHH
QTGTILALKDGYGFIKFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGDEVAKDI
CCCEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHE
VLVAEESAIS
EEEECCCCCC
>Mature Secondary Structure
MVNNRDLSLTRIGVFYDGNYFLHISNYYNYFHERKARISISGLHHFVRNYIAQQEGSDEQ
CCCCCCEEEEEEEEEECCCEEEEEHHHHHHHHHHHHEEEHHHHHHHHHHHHHHCCCCHHH
LCQIVDAHYFRGRLNAYEAAQEGNALFYDRLFDDILSSEGVTTHYLPVKTSQTGVRYEKG
HHHHHHHHHHHCCCCHHHHHHCCCEEEHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCC
IDVWLALEAFEQAFYKRFDVLVLIASDGDYVPLIRKLNTLGTRVMVLSWDFEYTSDNGKQ
CCEEEHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHCCCEEEEEEEEEEEECCCCCE
MTTRTSQDLLEEVTYPVAMHEIIDNRIKKNEPLINNLFVPPSKKRIFEKPLDREYDESEQ
EEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHCCCCCCCCCCHH
QTGTILALKDGYGFIKFPPNNLFFHYSNLNGVDFNDLKVDDAVQFVIGKNDRGDEVAKDI
CCCEEEEEECCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHE
VLVAEESAIS
EEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA