Click here to switch to the map view.

The map label for this gene is nrfC [H]

Identifier: 78189918

GI number: 78189918

Start: 2494383

End: 2495936

Strand: Reverse

Name: nrfC [H]

Synonym: Cag_1965

Alternate gene names: 78189918

Gene position: 2495936-2494383 (Counterclockwise)

Preceding gene: 78189919

Following gene: 78189917

Centisome position: 97.04

GC content: 47.62

Gene sequence:

>1554_bases
ATGAATTACGGTTTTGTTATAGATGCTCGCAAATGTATGGGATGTCATGGTTGCACGGTTGCGTGTAAATCGGAGCATCA
GGTGCCGCTTGGTGTGAATCGTACATGGGTGAAGTATGTGGAAAAGGGGATGTTCCCTGAAAGTCGTCGTTATTTTACGG
TGTTGCGTTGCAACCATTGTGCTGAGCCGCCTTGCGTGGATATTTGCCCTGTGGAGGCGTTGCATAAGCGTGAGGATGGG
ATTGTGGATTTTGATAAGCGTCGTTGCATTGGTTGCAAGGCGTGTGCTCAAGCCTGCCCTTATGGCGCGTTGTACATTGA
TCCTGAAACGCACACGTCGGCAAAGTGTAACTATTGTGCGCATCGCAAAGAGGTGGGTATGAAGCCTGCTTGTGTGGTGA
TTTGCCCTCAGCAAGCAATTGTTTCGGGCGATTTTGATGATCCCAATAGTGCGGTTTCCATTTTGCTTGCTAAGAATCAA
ACTGCTGTTCGTAAGCCTGAAAAGGGCACTTCCCCTAAACTCTTTTACATTAATGGCGATGGTGCTTCGCTTGATCCTTT
GGAGGTTTCAGCGGTTAATGGCTACCTCTGGAGTGAGCAGTTGCGTGGTGTTGGTCATTTTGCGGGTAAGTCGTATGAAA
AGCCTGCAAAGGCTACGGTTCCTCAGTCGGGCAAGCATGGACGTCCAAAGGCTCGCAAGGTGTATGATGTTCCATCAAAA
GGAGTTGTGTGGGGCTGGGAAGTTCCTGCCTATGTGTGGTCAAAAGCGGTCTCATCCGGTCTTTTTTTAGTATTGGTGAT
GATGCAGCTTTTTGTAGCATCACTGCTTTCGGAATCTATGCAGTGGGCATCATGGGCAGCATCGCTCTTTTTCCTTGCCT
TAACGGGCGGCTTTTTAGTAAAAGATCTTGATCGTCCTGAGCGTTTTTCATTTGTGATGTTGCGTCCTCAATTTGACTCA
TGGCTTGTTAAGGGCGGTTTAACCATTACGGGTTTTGGGGCATTTCTTGCGTTGTGGGGAGCGGGTTCATTTTTACAGCT
TCCACTGCTTACTTCCATTGCACAAGTCGGGGGGACGCTTTTTGCGGTTATCACGGCGATTTACACTGCATTTCTTTTTG
GCTCGGCTAAAGGGCGCGATTTTTGGCAAAGTCCTATGCTGCTGCTGCACATGTTGCTCAATTCGCTGTTAGCCGGTGGT
TCTGCTATGCTTTTGCTTGGTGTGGTAACGGCAAGTAGCAATGACCTTTTCTCCCTTTTACAGCCTTCGTTAGCTGCTGG
TTTTGCCTTCCACCTTATTATTATGGCATTAGAGCTGTTTGGTAAACATCCCTCAGCCTCAGCCGAACGTGCGGCGGAAA
CTATTCTGCATGGCGAGCTAAAACATCCATTTTGGATTGGCTCGGTGCTGATTGGTAACCTTATGCCTTTTGTGCTTTGC
CTTGTAGCCCCATCATCTTTTGGGCTTACAATAGCCGCATTAATGGCTCTGTGTGGTGTTTTTTATACTGAAAAAGTGTG
GGTACGTGCTCCACAAACAGTTCCTTTAAGTTAA

Upstream 100 bases:

>100_bases
CTTAGCTACGTAATGAGAACTTTTCTCGGTGCGCTCAGTGCGTTTGGGGCGCTTTTTCGGGGAAAAGAGTTAACAATTTT
TATGAGGAGCCTTTTCTTTC

Downstream 100 bases:

>100_bases
TTCCCTCTTTACGAAAGCGATATGAGTTACACGCATAAACCAACCGTTATTGAAGCCATCGCTGAAAAGCTGCACCTTAT
TCCCAATCTTCATGAGGGAG

Product: Fe-S-cluster-containing hydrogenase components 1-like protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MNYGFVIDARKCMGCHGCTVACKSEHQVPLGVNRTWVKYVEKGMFPESRRYFTVLRCNHCAEPPCVDICPVEALHKREDG
IVDFDKRRCIGCKACAQACPYGALYIDPETHTSAKCNYCAHRKEVGMKPACVVICPQQAIVSGDFDDPNSAVSILLAKNQ
TAVRKPEKGTSPKLFYINGDGASLDPLEVSAVNGYLWSEQLRGVGHFAGKSYEKPAKATVPQSGKHGRPKARKVYDVPSK
GVVWGWEVPAYVWSKAVSSGLFLVLVMMQLFVASLLSESMQWASWAASLFFLALTGGFLVKDLDRPERFSFVMLRPQFDS
WLVKGGLTITGFGAFLALWGAGSFLQLPLLTSIAQVGGTLFAVITAIYTAFLFGSAKGRDFWQSPMLLLHMLLNSLLAGG
SAMLLLGVVTASSNDLFSLLQPSLAAGFAFHLIIMALELFGKHPSASAERAAETILHGELKHPFWIGSVLIGNLMPFVLC
LVAPSSFGLTIAALMALCGVFYTEKVWVRAPQTVPLS

Sequences:

>Translated_517_residues
MNYGFVIDARKCMGCHGCTVACKSEHQVPLGVNRTWVKYVEKGMFPESRRYFTVLRCNHCAEPPCVDICPVEALHKREDG
IVDFDKRRCIGCKACAQACPYGALYIDPETHTSAKCNYCAHRKEVGMKPACVVICPQQAIVSGDFDDPNSAVSILLAKNQ
TAVRKPEKGTSPKLFYINGDGASLDPLEVSAVNGYLWSEQLRGVGHFAGKSYEKPAKATVPQSGKHGRPKARKVYDVPSK
GVVWGWEVPAYVWSKAVSSGLFLVLVMMQLFVASLLSESMQWASWAASLFFLALTGGFLVKDLDRPERFSFVMLRPQFDS
WLVKGGLTITGFGAFLALWGAGSFLQLPLLTSIAQVGGTLFAVITAIYTAFLFGSAKGRDFWQSPMLLLHMLLNSLLAGG
SAMLLLGVVTASSNDLFSLLQPSLAAGFAFHLIIMALELFGKHPSASAERAAETILHGELKHPFWIGSVLIGNLMPFVLC
LVAPSSFGLTIAALMALCGVFYTEKVWVRAPQTVPLS
>Mature_517_residues
MNYGFVIDARKCMGCHGCTVACKSEHQVPLGVNRTWVKYVEKGMFPESRRYFTVLRCNHCAEPPCVDICPVEALHKREDG
IVDFDKRRCIGCKACAQACPYGALYIDPETHTSAKCNYCAHRKEVGMKPACVVICPQQAIVSGDFDDPNSAVSILLAKNQ
TAVRKPEKGTSPKLFYINGDGASLDPLEVSAVNGYLWSEQLRGVGHFAGKSYEKPAKATVPQSGKHGRPKARKVYDVPSK
GVVWGWEVPAYVWSKAVSSGLFLVLVMMQLFVASLLSESMQWASWAASLFFLALTGGFLVKDLDRPERFSFVMLRPQFDS
WLVKGGLTITGFGAFLALWGAGSFLQLPLLTSIAQVGGTLFAVITAIYTAFLFGSAKGRDFWQSPMLLLHMLLNSLLAGG
SAMLLLGVVTASSNDLFSLLQPSLAAGFAFHLIIMALELFGKHPSASAERAAETILHGELKHPFWIGSVLIGNLMPFVLC
LVAPSSFGLTIAALMALCGVFYTEKVWVRAPQTVPLS

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=180, Percent_Identity=40.5555555555556, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI226510944, Length=150, Percent_Identity=36, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787122, Length=153, Percent_Identity=37.9084967320261, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787872, Length=154, Percent_Identity=37.012987012987, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI2367245, Length=149, Percent_Identity=35.5704697986577, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1790326, Length=175, Percent_Identity=32, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87082180, Length=145, Percent_Identity=36.551724137931, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789067, Length=166, Percent_Identity=31.9277108433735, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87082179, Length=145, Percent_Identity=33.1034482758621, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788811, Length=147, Percent_Identity=30.6122448979592, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787749, Length=154, Percent_Identity=32.4675324675325, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789370, Length=171, Percent_Identity=29.8245614035088, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787963, Length=128, Percent_Identity=28.125, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787478, Length=100, Percent_Identity=36, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787740, Length=94, Percent_Identity=37.2340425531915, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1789079, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87082114, Length=183, Percent_Identity=28.4153005464481, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56280; Mature: 56280

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYGFVIDARKCMGCHGCTVACKSEHQVPLGVNRTWVKYVEKGMFPESRRYFTVLRCNHC
CCCCEEEECHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCC
AEPPCVDICPVEALHKREDGIVDFDKRRCIGCKACAQACPYGALYIDPETHTSAKCNYCA
CCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCHHHHHHHCCCCEEEECCCCCCCCCCHHHH
HRKEVGMKPACVVICPQQAIVSGDFDDPNSAVSILLAKNQTAVRKPEKGTSPKLFYINGD
HHHHCCCCCEEEEECCCHHHEECCCCCCCCEEEEEEECCCHHHCCCCCCCCCEEEEEECC
GASLDPLEVSAVNGYLWSEQLRGVGHFAGKSYEKPAKATVPQSGKHGRPKARKVYDVPSK
CCCCCCEEEEECCCHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
GVVWGWEVPAYVWSKAVSSGLFLVLVMMQLFVASLLSESMQWASWAASLFFLALTGGFLV
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
KDLDRPERFSFVMLRPQFDSWLVKGGLTITGFGAFLALWGAGSFLQLPLLTSIAQVGGTL
HCCCCCCCEEEEEECCCCCHHHHHCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FAVITAIYTAFLFGSAKGRDFWQSPMLLLHMLLNSLLAGGSAMLLLGVVTASSNDLFSLL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHCCCCCHHHHHH
QPSLAAGFAFHLIIMALELFGKHPSASAERAAETILHGELKHPFWIGSVLIGNLMPFVLC
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LVAPSSFGLTIAALMALCGVFYTEKVWVRAPQTVPLS
HHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCC
>Mature Secondary Structure
MNYGFVIDARKCMGCHGCTVACKSEHQVPLGVNRTWVKYVEKGMFPESRRYFTVLRCNHC
CCCCEEEECHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCC
AEPPCVDICPVEALHKREDGIVDFDKRRCIGCKACAQACPYGALYIDPETHTSAKCNYCA
CCCCCCCCCCHHHHHCCCCCCCCCCCHHHCCHHHHHHHCCCCEEEECCCCCCCCCCHHHH
HRKEVGMKPACVVICPQQAIVSGDFDDPNSAVSILLAKNQTAVRKPEKGTSPKLFYINGD
HHHHCCCCCEEEEECCCHHHEECCCCCCCCEEEEEEECCCHHHCCCCCCCCCEEEEEECC
GASLDPLEVSAVNGYLWSEQLRGVGHFAGKSYEKPAKATVPQSGKHGRPKARKVYDVPSK
CCCCCCEEEEECCCHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
GVVWGWEVPAYVWSKAVSSGLFLVLVMMQLFVASLLSESMQWASWAASLFFLALTGGFLV
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
KDLDRPERFSFVMLRPQFDSWLVKGGLTITGFGAFLALWGAGSFLQLPLLTSIAQVGGTL
HCCCCCCCEEEEEECCCCCHHHHHCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FAVITAIYTAFLFGSAKGRDFWQSPMLLLHMLLNSLLAGGSAMLLLGVVTASSNDLFSLL
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEHCCCCCHHHHHH
QPSLAAGFAFHLIIMALELFGKHPSASAERAAETILHGELKHPFWIGSVLIGNLMPFVLC
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LVAPSSFGLTIAALMALCGVFYTEKVWVRAPQTVPLS
HHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]