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The map label for this gene is 78189888

Identifier: 78189888

GI number: 78189888

Start: 2467670

End: 2468335

Strand: Reverse

Name: 78189888

Synonym: Cag_1935

Alternate gene names: NA

Gene position: 2468335-2467670 (Counterclockwise)

Preceding gene: 78189889

Following gene: 78189887

Centisome position: 95.97

GC content: 46.25

Gene sequence:

>666_bases
ATGCGCTCGAATTTATTTCTCTCCTCTCTTACAGCAAAAGTGCTTATGGCACTTGCGGGGCTTTTTTTGCTGACCTTTCT
TTTTCTTCATTTAACGCTCAATTTGCTGCTGCTTTTGCCCGATGGTGGGCAGGCATTTAGTACGGCGGCGGCATTTATGG
GGGCAAATCCGCTCATAAAAATTGCTGAGGTATTTCTTATTGCCTCTTTTGTGCTGCATGGAGTGCTCGGTTTTATGCTT
TCAGCGAAAAGCCGTGCGGCGCGTCCAGTGGCGTATGCAACGGCAAACCGTTCCGATACGGCGCTCTTTTCCCGCTACAT
GCTCCATTCAGGCATCATTATCTTGCTCTTTCTTTTGTGGCACAGTGTTGATTTTTACTTTATAAAACTTGGTATTGTGC
TACCTCCAGCGGGCATTGAACCGCACGATTTTTATCAGCGTGCGCTTCTTCTTTTTACCCATCCGGGCATTTCTCTCTTT
TACCTTCTCTCTTTTATTGCGCTTGGTGTGCATGTGAACCATGCTATGCAATCGGCGTTTCAAACGTTGGGCTTGCACCA
TAGTCGCTACGTTGATGGCGTAAAGTTGGCAAGTTCGCTTATTGCCATTGTTATTGCTACGGGTTTTTCAATTGTGCCTA
TCGTGCTATGCTTTTTCCGTCCGTAA

Upstream 100 bases:

>100_bases
AGATAAGGCTTTATGGCAAATGTGCTAATTTTTTGCCGTTAGTTGGAAGTAAGGTGGATGGCGGTTACCTTCTGCCTTAG
GTTATCATTTATTCTTCTAT

Downstream 100 bases:

>100_bases
TGCCTCTTAGCCCATCTTTTTTTCCAACCCTCAGTTTTTTTCTTGTATGACTATGTTCGATGCCAAAATTCCTGAAGGAG
CGTTGGCGCAAAAGTGGAGC

Product: succinate dehydrogenase, cytochrome b558 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Succinate Dehydrogenase Subunit C; Succinate Dehydrogenase Cytochrome; Cytochrome B Subunit; Succinate Dehydrogenase Cytochrome Subunit; Fumarate Reductase Cytochrome B Subunit; SuccinateQuinone Oxidoreductase-Like Protein; Succinate Dehydrogenase Subunit; Succinate Dehydrogenase Cytochrome B Subunit SdhC; Succinate Dehydrogenase Subunit C/Fumarate Reductase

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MRSNLFLSSLTAKVLMALAGLFLLTFLFLHLTLNLLLLLPDGGQAFSTAAAFMGANPLIKIAEVFLIASFVLHGVLGFML
SAKSRAARPVAYATANRSDTALFSRYMLHSGIIILLFLLWHSVDFYFIKLGIVLPPAGIEPHDFYQRALLLFTHPGISLF
YLLSFIALGVHVNHAMQSAFQTLGLHHSRYVDGVKLASSLIAIVIATGFSIVPIVLCFFRP

Sequences:

>Translated_221_residues
MRSNLFLSSLTAKVLMALAGLFLLTFLFLHLTLNLLLLLPDGGQAFSTAAAFMGANPLIKIAEVFLIASFVLHGVLGFML
SAKSRAARPVAYATANRSDTALFSRYMLHSGIIILLFLLWHSVDFYFIKLGIVLPPAGIEPHDFYQRALLLFTHPGISLF
YLLSFIALGVHVNHAMQSAFQTLGLHHSRYVDGVKLASSLIAIVIATGFSIVPIVLCFFRP
>Mature_221_residues
MRSNLFLSSLTAKVLMALAGLFLLTFLFLHLTLNLLLLLPDGGQAFSTAAAFMGANPLIKIAEVFLIASFVLHGVLGFML
SAKSRAARPVAYATANRSDTALFSRYMLHSGIIILLFLLWHSVDFYFIKLGIVLPPAGIEPHDFYQRALLLFTHPGISLF
YLLSFIALGVHVNHAMQSAFQTLGLHHSRYVDGVKLASSLIAIVIATGFSIVPIVLCFFRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.3.99.1

Molecular weight: Translated: 24221; Mature: 24221

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSNLFLSSLTAKVLMALAGLFLLTFLFLHLTLNLLLLLPDGGQAFSTAAAFMGANPLIK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCHHHH
IAEVFLIASFVLHGVLGFMLSAKSRAARPVAYATANRSDTALFSRYMLHSGIIILLFLLW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHH
HSVDFYFIKLGIVLPPAGIEPHDFYQRALLLFTHPGISLFYLLSFIALGVHVNHAMQSAF
HHHHHHHHEEHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QTLGLHHSRYVDGVKLASSLIAIVIATGFSIVPIVLCFFRP
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRSNLFLSSLTAKVLMALAGLFLLTFLFLHLTLNLLLLLPDGGQAFSTAAAFMGANPLIK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCHHHH
IAEVFLIASFVLHGVLGFMLSAKSRAARPVAYATANRSDTALFSRYMLHSGIIILLFLLW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHH
HSVDFYFIKLGIVLPPAGIEPHDFYQRALLLFTHPGISLFYLLSFIALGVHVNHAMQSAF
HHHHHHHHEEHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QTLGLHHSRYVDGVKLASSLIAIVIATGFSIVPIVLCFFRP
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA