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The map label for this gene is ysgA [H]

Identifier: 78189691

GI number: 78189691

Start: 2254245

End: 2255042

Strand: Reverse

Name: ysgA [H]

Synonym: Cag_1735

Alternate gene names: 78189691

Gene position: 2255042-2254245 (Counterclockwise)

Preceding gene: 78189692

Following gene: 78189690

Centisome position: 87.67

GC content: 50.63

Gene sequence:

>798_bases
ATGAATTTGCCTTTGCCACCTCTTAGCAAAGCCGCTTTGCGCCGTTATGCAGCCCTGCACCACAAAAAGCATCGCGATAG
CGACAAACTTTTTTTAGCCGAAGGGTTGCGTACCGTGCGAGAATTGTGCCAGCAATTGCCGCATGAAGATTTTTTAGTTG
CCCTCTTGCTACGCCCTCACGCTGAAGCTGAAGCACTCACCTTTGCCCAACCATATGCCCACAAGCTTTTTTCTATCACC
GCAAAAGAGTGTGCGCAGCTTGCCGATACCACTACGCCATCGGGCATTTTTGCAATTTTTCGCCAACCAACCTTTCAGCC
CACCATAGTGAACCCGCAGAGGCGCTCGTTAGTGGTGGCGCTTGATGATGTGCAAGATCCGGGCAATGTTGGCACTATTA
TGCGTACAGCCGCATGGTTTGGGGTGGACGCACTGCTTTGTAGCCAAGGCACGGCAGACCTCTACAACCCCAAAGTTGTT
CGCTCGTGCGCTGGTAGCCTTTTTGCCTTACCTCACTACCGGTGCAACTTAATGGTGCATGAACTTTCGCGCTGGCAACA
GCAAGGTTATTCGATTGTGTGCTCGTCGCTTGAGGGTAGAGATATTTGTGGAGGTGAAGCGTTTGGTGACAAAACGGTAA
TTGTTATTGGCAACGAAGCCAACGGTGTGAGCCAAGCGGTGCAAGCATCTGCTGATATGCTGGTACGCATTCCTCATGCT
GGTAGTAAGCCTGCGGTGGAATCACTTAATGCCTCAATTGCTGCCGCTATTCTTATTGAGCGATGTGTATTGCGTTAA

Upstream 100 bases:

>100_bases
ATCCACTTACACCAAAAAGTGTAGGAATTCCACCATCTGATTTTTCTCATAGCCCAACCTCTATAATGGAGAGTTTGAAA
AAACGTGCAGGGAGGGTGCC

Downstream 100 bases:

>100_bases
ATGATGCTTTGCAAAAATGTGTTACTTGCAATCAAGCGCTGTTATTGTTAGAAATGGCAAGAAGAATTTCTCTGCCTAAG
AGGAAAGATGCTTTTGCATT

Product: SpoU rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MNLPLPPLSKAALRRYAALHHKKHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPHAEAEALTFAQPYAHKLFSIT
AKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVV
RSCAGSLFALPHYRCNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHA
GSKPAVESLNASIAAAILIERCVLR

Sequences:

>Translated_265_residues
MNLPLPPLSKAALRRYAALHHKKHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPHAEAEALTFAQPYAHKLFSIT
AKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVV
RSCAGSLFALPHYRCNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHA
GSKPAVESLNASIAAAILIERCVLR
>Mature_265_residues
MNLPLPPLSKAALRRYAALHHKKHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPHAEAEALTFAQPYAHKLFSIT
AKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVALDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVV
RSCAGSLFALPHYRCNLMVHELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHA
GSKPAVESLNASIAAAILIERCVLR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=161, Percent_Identity=34.7826086956522, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6324775, Length=211, Percent_Identity=28.436018957346, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28923; Mature: 28923

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPLPPLSKAALRRYAALHHKKHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPH
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
AEAEALTFAQPYAHKLFSITAKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCCEECCCCCEEEEE
LDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVVRSCAGSLFALPHYRCNLMVH
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
ELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHA
HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCC
GSKPAVESLNASIAAAILIERCVLR
CCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLPLPPLSKAALRRYAALHHKKHRDSDKLFLAEGLRTVRELCQQLPHEDFLVALLLRPH
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
AEAEALTFAQPYAHKLFSITAKECAQLADTTTPSGIFAIFRQPTFQPTIVNPQRRSLVVA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCCCEECCCCCEEEEE
LDDVQDPGNVGTIMRTAAWFGVDALLCSQGTADLYNPKVVRSCAGSLFALPHYRCNLMVH
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
ELSRWQQQGYSIVCSSLEGRDICGGEAFGDKTVIVIGNEANGVSQAVQASADMLVRIPHA
HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCC
GSKPAVESLNASIAAAILIERCVLR
CCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]